EST details — SGN-E396947

Search information 
Request: 396947Match: SGN-E396947
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184271Clone name: TUS-44-F13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184271 is on microarray TOM1 spot ID 1-1-4.2.16.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72370 [cLER-1-P19] Trace: SGN-T91969 EST: SGN-E280415 Direction: 5' Facility: TIGR
Clone: SGN-C184271 [TUS-44-F13] Trace: SGN-T199975 EST: SGN-E398649 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396947Length: 695 bp (868 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396947 [] (trimmed) GACTATAAGATCAATCTTGAATCAGAATTCATATCAAAATCTGTCTGCTACATTTGACATTACCTTAAACAATACTACAGGTAAGTTCGGGTCAA
AAACAGACTAACAGAGGGTAAAACATAAGGAGTTGGTAAAGAACACAACGTTTTCCACTATTCTACCAGTGGATTGGACAGTCAAATGTAGATTT
CAAATTAGATCTATCTTGCTATGTCTTGCCTCTGCCTCTCCAATTTGCTCCGACAATAAAATTAAACTATATCTTCTATAAGTTACTTTCCAAGA
GGATCCGAATTGGCCTTCTGGGGGGAGCTTTATTCGTATATTTTCTTCCTCTTCAAGATGGTAGGTAATATCGAGATAAAACCAATGAGGAAGAG
CACGGACAAGGTCTTCAGATCGTATAGATCTTTAACAGACTTCAGCTCACCAAGAGCTAGGCCAGCCTTGACTGTAATATATGCGGCTGGAATGA
GACCAACCAATGTGGCCGAGAAGAAAATATGGAATGGTATATCCACTATTGGAGATGCCAAGTTGATGAAAAGATTTGGCAATGTTGGAGTTATT
CTCAGAAACAACATATAGTTGAGCAACTTATCCCGACGCTTGGCTATCTCTGCCTGGAAGAATCTCAATTTTTCAGGCCCCCACCAGCTAACCAA
AGGTCTGCCAATTAATTTAAACAGAAAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396947] SGN-U568059 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198273 [Download][View] Facility Assigned ID: FA0AAD32CC07FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0050 Quality Trim Threshold: 14.5