EST details — SGN-E396879
| Search information |
| Request: 396879 | Match: SGN-E396879 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C184430 | Clone name: TUS-44-M4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184430 is on microarray TOM1 spot ID 1-1-5.1.16.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C21379 [cLED-33-G23] | Trace: SGN-T56995 | EST: SGN-E239722 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C184430 [TUS-44-M4] | Trace: SGN-T1828 | EST: SGN-E378632 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C184430 [TUS-44-M4] | Trace: SGN-T199964 | EST: SGN-E398638 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E396879 | Length: 201 bp (899 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396879 [] (trimmed)
AAAAAAAAAAACCCAAAAAAAAAAAAAATTTTTTTTTGGGAAAAAAAAAAAAAAAAAAAAGGAAACCCCTCTAAGGAATAACGGAAAAAAATGGG
TCAAAACATATAAAAAGGTTCAAAAAAAAAAAATTCCAAAAATCAAAAAAAGGGGGGGAAAAAAAAATAAATTAATGGGGGAAGGAATGACCGGG
GTTCCTTTAAA
TCAAAACATATAAAAAGGTTCAAAAAAAAAAAATTCCAAAAATCAAAAAAAGGGGGGGAAAAAAAAATAAATTAATGGGGGAAGGAATGACCGGG
GTTCCTTTAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E396879] | SGN-U600753 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T198205 [Download][View] | Facility Assigned ID: FA0AAD32BG02FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.645 | Expected Error Rate: 0.0281 | Quality Trim Threshold: 14.5 |
Working
