EST details — SGN-E396857

Search information 
Request: 396857Match: SGN-E396857
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184346Clone name: TUS-44-I16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184346 is on microarray TOM1 spot ID 1-1-1.1.16.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C20150 [cLED-29-H24] Trace: SGN-T56162 EST: SGN-E239874 Direction: 5' Facility: TIGR
Clone: SGN-C184346 [TUS-44-I16] Trace: SGN-T198182 EST: SGN-E396856 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E396857Length: 602 bp (860 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396857 [] (trimmed) CAGCACAGATGCACTTAGATCAACAAATGTTGAAGACGATAAAATTGGAAGAGAAACTCGTCCTTCAAATGTTTTGGAGCCGTTTGTTGCTGCCC
TTCCTTTTCGAGGCTCTGCAGCTACTGTTCATTCTCTGGATTCAACAGTTTTCTCTCCTTATTACTGTTGGTGTCCTCCTGCTGTATCCACTCTG
CAGTACTCAGTTGGAACTCCACATTTGCCTGTTTTATCCACAGACTCTTCAATACCACTACTTTCATCAATAGCACCTTCTGCTTGTTCATCTAG
TATTTTGACACCAAACCCGTCTCTTGTCACTGATGTCTCCGCTTTAGATTTCCCACCTCTTCTGCCCGAGCCATTGATCAGGTTGCCATTTTCTT
TGGGTCCTTCACAGCAAATACCTACTTTCACACCTTTAGTAGGCGACTCTATAGTCCATATTCCTGTTATTGACGTGTGCTCTTCTGGTCAAGGT
TACTTTGTCAGCGCAGGTCCTGCTATCTCTGGCAGTATTCCACAGTTACACCCAAATTTGGTGAATCCTTTAATTCCCCCAAAAACAGAATCAAT
GGCTGAGAAAAATGCCAGGGAGACACTTCGGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396857] SGN-U570403 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198183 [Download][View] Facility Assigned ID: FA0AAD32BE08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0031 Quality Trim Threshold: 14.5