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EST details — SGN-E396691

Search information 
Request: 396691Match: SGN-E396691
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183889Clone name: TUS-43-F15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183889 is on microarray TOM1 spot ID 1-1-2.2.19.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4564 [cLEC-27-O19] Trace: SGN-T28828 EST: SGN-E204094 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396691Length: 598 bp (883 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396691 [] (trimmed) ATTTATATTTGGGGTCTTATAGTTTTGTGCAACCATCTCCCTCTTTCCCCATCTTGTACCGGATAAGGAAATCCTATAACAGGGCGTTTCCCCTT
CCTCTTTCTCTGTCTCAGCGAACCAGTAAGCCATGTCTCTCTCTTCTTTCTCTACAATGCCCACCGCCAAGCTCCGCCTACAAACCCTACCCACT
TCCACCACAGTCACACCCTTAACTCTGCACTCTCCATTTCTCCCCTCTTTCAGACTCCCAAAACATAAACCCCTTTCAATTCTCCGCATTTCAAC
ATCTCCAGCTATCTCTGCCTCTCTTGAAGCTGGAGTCGGAATAATGGCAACCAAACTTGGAATGATGAGTTTCTTTGAAGATTCAGGAACAGTGG
TGCCTGTTACTGTTGTAGGGTTTCGCGAAGGAAATATTATTACTCAAATTAAAACTGAAGCTACTGATGGATATAGTGCTGTACAAGTTGGGTAT
CGACGAGTTCGTGATAGAAAACTAACTAAACCTGAAATGGGTCATCTTGAAAAATCTGGGATTATTCCTCTCCGTCATTTGCAGGAGTTTCGTCT
TCAGTCTGTTGATGGATTTGAAGTAACG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396691] SGN-U569256 Tomato 200607 Build 2 39 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198017 [Download][View] Facility Assigned ID: FA0AAD31CC08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0029 Quality Trim Threshold: 14.5