EST details — SGN-E396666
| Search information |
| Request: 396666 | Match: SGN-E396666 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C184139 | Clone name: TUS-44-A1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184139 is on microarray TOM1 spot ID 1-1-8.1.16.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23579 [cLED-5-M21] | Trace: SGN-T49597 | EST: SGN-E230981 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T1814 | EST: SGN-E378462 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C184139 [TUS-44-A1] | Trace: SGN-T197590 | EST: SGN-E396264 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E396666 | Length: 511 bp (879 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396666 [] (trimmed)
AAACAAAGGATATTAAATACATATATATATCATAAATTCCAAAATGTCATAGTGCATATTTGAAATGGGGCCGGCAGTTGTTATTTTTATAACAA
GTTGAGTGAATTATTCCCCTCACTACTTCAACAAAAATTGTAAGTTGCTAAATACAAATTAGGGGCCCCCACAAAAACAACATTAATTATATTAT
TTCATACAATACAAAAAAACAAATATTACTATGTTAATCCTTTAAAGCATCCCCCCTGGAATAAATCCATTAATATTATGAGCAGTTGTTGCTGC
ATTAACCTCATGATCATTTGCCCCCATATTTGGATTGTATCCAAATTGAGGCGATGAAAAATTCAAACGGAAAGGTTGAAAAAAAGGTTGTGCAA
TATTTTGTGGAGGGAGTCAATTGTATTCCATTGTTTGCCCGCGGGGGTTTCCCCATGACAATCCAAGTGAAATTCTAGCTGCACTTTCTTCCAAT
TTGTTTTTAAATTGTTTTTTTGCCTCTCCCCAACTT
GTTGAGTGAATTATTCCCCTCACTACTTCAACAAAAATTGTAAGTTGCTAAATACAAATTAGGGGCCCCCACAAAAACAACATTAATTATATTAT
TTCATACAATACAAAAAAACAAATATTACTATGTTAATCCTTTAAAGCATCCCCCCTGGAATAAATCCATTAATATTATGAGCAGTTGTTGCTGC
ATTAACCTCATGATCATTTGCCCCCATATTTGGATTGTATCCAAATTGAGGCGATGAAAAATTCAAACGGAAAGGTTGAAAAAAAGGTTGTGCAA
TATTTTGTGGAGGGAGTCAATTGTATTCCATTGTTTGCCCGCGGGGGTTTCCCCATGACAATCCAAGTGAAATTCTAGCTGCACTTTCTTCCAAT
TTGTTTTTAAATTGTTTTTTTGCCTCTCCCCAACTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E396666] | SGN-U577632 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T197992 [Download][View] | Facility Assigned ID: FA0AAD32AA01FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.913 | Expected Error Rate: 0.0216 | Quality Trim Threshold: 14.5 |
Working
