EST details — SGN-E396480

Search information 
Request: 396480Match: SGN-E396480
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173501Clone name: TUS-16-E19
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173501 is on microarray TOM1 spot ID 1-1-6.1.18.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C2733 [cLEC-16-P18] Trace: SGN-T26969 EST: SGN-E205080 Direction: 5' Facility: TIGR
Clone: SGN-C173501 [TUS-16-E19] Trace: SGN-T192845 EST: SGN-E391519 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E396480Length: 572 bp (893 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396480 [] (trimmed) ACCCTTAAAAAACCAAACCCCCCTTTTTTAAAAATTTTTTTAATTTTCAATTCCCCCCAAAAAAATTTTTTCTTTGGAAAAAATTCCCAAAACCC
CCCAGGGGGAGTTAAAGGGACCCGCGGAAAAAATTCCCTTTGCCCTTTTCAGGAAAAAAAACAAAAACCCCCGGGGGGGAAACCCCCCCGGCAAA
AACCCCAAGGAAAACCCCATTCCCCCCGGCCCCCCCAAGGGGGGGGAAACCAAGGGGGACCCCCCCCCCCGGATTCCCCCCCCGGAAAAAAAAAA
AAAAAACCCCCCCCCAAAAACCCTCCCCTTTTCGGGATCCCGTTGGGGGAACCCCCCCCCCTTTTTTTTTCAAACCCCCCCCTTCGGAGGGAAAA
AAACCCCCCTTAGGGGGGAAATTTTTAAAAGAAAAAAAACCCCCCCCAAAAAAACCAACCCCCCCCTTTTTAACCCCGGAAAAAAAGGGGGGGAA
ATGGGTTTTTTTAAAAAAACCCCCCGGGCCAAATCCCCGCCCCCCGGGGGAACCCCTATTTTTAAAGGGCCCCCCCCCCGGGGGGACCCCCCCTT
TT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396480] SGN-U602342 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197806 [Download][View] Facility Assigned ID: FA0AAD4AC10FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.761 Expected Error Rate: 0.0213 Quality Trim Threshold: 12.5