EST details — SGN-E396448
Search information |
Request: 396448 | Match: SGN-E396448 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C185324 | Clone name: TUS-47-B10 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C185324 is on microarray TOM1 spot ID 1-1-7.2.9.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C73549 [cLER-5-D9] | Trace: SGN-T93198 | EST: SGN-E279689 | Direction: 5' | Facility: TIGR |
Clone: SGN-C185324 [TUS-47-B10] | Trace: SGN-T192454 | EST: SGN-E391128 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E396448 | Length: 717 bp (886 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E396448 [] (trimmed)
TAACAAATGTCGATATTTCACAACCAAATTTTCAAACTACAAGAACTACCAAATAACATGATAAAACTTTAAAATATCAAGCAACACACAAGTAA
GGCAGAGATCGCGAGTGCATGAGTGCATGACATTTTTAGTCCCATAATTTTAACAAAGGTAAAAGTTTTAGACGGACCAAAATCTTAAAATTCAA
ATAACACTGCACTTGGCTTGAACCGAAAAAAGAAAGGATTCAGGGATAGTTAAGAACAAATTTCAGCTCAACTAGGTTTCCTTCGGTGGGGCCTT
TTTGGCTGCTTCTGCAGCAGCTTTCTCTGCTTCGATCTCAGCAACAATGGCATCAATTTCACCTTCCTCAAGTTGCTTAAGCCCATGCTCTTTTG
TCATCACAGCAACTTCTATGTTTTTTCCACCACTTTCAACAACTTCAAGCAATGCACGTATTGCTAGTTTCACAGTTTCCTGGCCAGATGTTTCT
TTGTAATTCTTCTCCAAGAATTCCCGAGTAGAGTTGGAGTTTCTACCAGTCGCATTGGCTTTCCAAGCTGAGAATGTACCTGATGGATCTGTTTG
GTAAAGTGAGGGGACACCTGTGTGTGGGTCATAACCAATGATCAAGGTGGATAGACCAAATGGCCTCACCCCACCACTTTGGGTGTACTTTTGCT
GAAGACAGCAATGTAACGAGTTATGTACTCAACAGTAACAGGATCTTCAACT
GGCAGAGATCGCGAGTGCATGAGTGCATGACATTTTTAGTCCCATAATTTTAACAAAGGTAAAAGTTTTAGACGGACCAAAATCTTAAAATTCAA
ATAACACTGCACTTGGCTTGAACCGAAAAAAGAAAGGATTCAGGGATAGTTAAGAACAAATTTCAGCTCAACTAGGTTTCCTTCGGTGGGGCCTT
TTTGGCTGCTTCTGCAGCAGCTTTCTCTGCTTCGATCTCAGCAACAATGGCATCAATTTCACCTTCCTCAAGTTGCTTAAGCCCATGCTCTTTTG
TCATCACAGCAACTTCTATGTTTTTTCCACCACTTTCAACAACTTCAAGCAATGCACGTATTGCTAGTTTCACAGTTTCCTGGCCAGATGTTTCT
TTGTAATTCTTCTCCAAGAATTCCCGAGTAGAGTTGGAGTTTCTACCAGTCGCATTGGCTTTCCAAGCTGAGAATGTACCTGATGGATCTGTTTG
GTAAAGTGAGGGGACACCTGTGTGTGGGTCATAACCAATGATCAAGGTGGATAGACCAAATGGCCTCACCCCACCACTTTGGGTGTACTTTTGCT
GAAGACAGCAATGTAACGAGTTATGTACTCAACAGTAACAGGATCTTCAACT
Unigenes |
Current Unigene builds | |||||
[SGN-E396448] | SGN-U577617 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T197774 [Download][View] | Facility Assigned ID: FA0AAD35DA05FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0089 | Quality Trim Threshold: 14.5 |