EST details — SGN-E396300

Search information 
Request: 396300Match: SGN-E396300
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185539Clone name: TUS-47-K9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185539 is on microarray TOM1 spot ID 1-1-8.3.9.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C75733 [cLES-15-E10] Trace: SGN-T100792 EST: SGN-E287287 Direction: 5' Facility: TIGR
Clone: SGN-C185539 [TUS-47-K9] Trace: SGN-T197765 EST: SGN-E396439 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396300Length: 713 bp (903 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E396300 [] (trimmed) GCTTCCTCTGTTATTTCCAAGACTAATTTCATTGACACACACAAATCATCCTTCTATGGCGTTCCAATTTCATCACAAACTCGATTGAAAATCGT
TAAATCGACTCCACAAAACATGTCTGTTTCCATGTCTGCTGATGCTTCTCCTCCTTACGATCTCGGAAGTTTCAGTTTTAATCCGATTAAGGAAT
CGATTGTTGCTCGCGAAATGACTCGGAGGTATATGACGGATATGATTACTTATGCTGATACTGATGTTGTCATTGTTGGTGCTGGATCTGCTGGT
TTATCTTGTGCTTATGAACTCAGCAAGAACCCTAATGTTCAGGTGGCTATTCTTGAGCAATCTGTGAGCCCTGGTGGAGGTGCTTGGCTAGGTGG
ACAACTCTTCTCTGCTATGGTTGTGCGTAAGCCAGCACATCTTTTCTTGAACGAGCTAGGCATTGACTACGACGAGCAAGACAACTACGTGGTCA
TCAAACACGCTGCCTTGTTCACCTCAACCATCATGAGCAAGCTTTTGGCCAGGCCAAATGTGAAGCTCTTCAATGCTGTTGCAACAGAGGACCTT
ATCGTGAAGAACGGAAGAGTCGGTGGTGTTGTCACTAACTGGTCTTTGGTTTCCCAGAACCACGACACACAATCCTGCATGGACCCTAATGTTAT
GGAGGCTAAAATTGTGGTCAGCTCTTGTGGCCACGACGGCCCCATGGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396300] SGN-U580030 Tomato 200607 Build 2 241 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197626 [Download][View] Facility Assigned ID: FA0AAD35AF05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0021 Quality Trim Threshold: 14.5