EST details — SGN-E396199

Search information 
Request: 396199Match: SGN-E396199
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176774Clone name: TUS-24-N4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176774 is on microarray TOM1 spot ID 1-1-5.2.9.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27849 [cLEF-45-L5] Trace: SGN-T61472 EST: SGN-E246737 Direction: 5' Facility: TIGR
Clone: SGN-C176774 [TUS-24-N4] Trace: SGN-T197526 EST: SGN-E396200 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396199Length: 720 bp (853 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396199 [] (trimmed) GAACAATAAAGGAATATCTTTGTCACTTTGATTAATATCAATAGTAATTGTACAAATATGTAGAAAATTATCAACATAAGTAAACACTAAAGTCA
AAGTTGGAAAAAGGGGTAAAAGAGGTTAAAAAAACAAACAAACTAGACCACCTCATCATCCTCGAGAAACTCAACCAGACAACGCGTCTCCAAAA
AAGAACTTATTTTCTTTTCTAGAGAATCTAACAACTTATGCAAGTACTTTTCACCTGACCTTCTTACAGAGATCTGAAAACTCGTAGTACAAAAT
TCCCAAAACTATACCAAAACTTGGGCTAATCTATCTATGCTACCTATTTTTTTTCACAAAATTAATCTCTACATATGATTACATCAAATCACAAG
GTTGAAATTTTTTTTGCTTTTTTTTGCATAATATCTTCATTGTAAGCAATGGTAATATCTTGTGCAATTTTAATAGCATCAGCAGAAGCACCTGA
TAGTCCTCTTCTTGTGAAACCAACTGCATATAGCCCAGATTTTCCTTTCCAACTATTTGGAAATGGTGCTTTTGGGAATCCATTTTTGGAAAAGA
ATTCACTTTCCTTTAGCCAAAAAGGAACATTGCTACAATAGCCAGTAGCAAGAAGAACAGAATCGATTTCGAGTTTTTCACCATTGACAAGCTCA
ACGGTGCCACATGAAAACCTCTTGATTCCTGGGACAACATTGATTTTTCTTGATC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396199] SGN-U565693 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197525 [Download][View] Facility Assigned ID: FA0AAD12DG02FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.934 Expected Error Rate: 0.0083 Quality Trim Threshold: 14.5