EST details — SGN-E396190

Search information 
Request: 396190Match: SGN-E396190
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C176726Clone name: TUS-24-L4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176726 is on microarray TOM1 spot ID 1-1-5.4.9.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C27725 [cLEF-45-F15] Trace: SGN-T61300 EST: SGN-E246565 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E396190Length: 620 bp (881 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396190 [] (trimmed) GTTTGTTCACATGGGCAATGGTAGTAACCCTCTAGCAGCCTCTTTGTATGTCCCGAGGAATGATAAACTTGTTAAGATTGACGGGAACCTGATTA
TTCAGTCTGTATTAGCAAGTGAGAAAGCCATGGCATCTCATGGAGGTTCTGATAAGAACAATAGAGAGACAGGCCTTGCAGTTCCTGGAGATTTA
GCCCCTGCTATCCCCGGAAGCCATCCTCGCCTTTATCGAAGTTCTGCAGTGGGACAAAGGGCTCTTGGGACTGTAGAAAAGGAGAATGTGCAGTC
AACTATGCAGCAGTGGTACCTTGAAGGTGTTGCCGGACCTTTGATGAGTTCAGGCATGTGTACAGAAGTGTTCCAGTTTGATGTTCTATCATCTG
CTCCAGGGGCCATAGTTCGTGCTACCAACGGTAGAAATATTTCTATGGAACAAAGGCAGAATGCCACACGCATCCACAGAAATAGAAGGATCCTC
AATGGTACTCCTGTTTCCCTTTCTAGACCCTCTCATAACATTTCTGAAGAACAAAGTGGAACAGCTGGAAAGCAAGAGAAACTTCACCGGGAACA
AGTCCACTATCATCCATGGTAGTGTCTGTTTTGGTTGATCCAAGAGAGGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396190] SGN-U572181 Tomato 200607 Build 2 7 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197516 [Download][View] Facility Assigned ID: FA0AAD12DF02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0034 Quality Trim Threshold: 14.5