EST details — SGN-E395974

Search information 
Request: 395974Match: SGN-E395974
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174190Clone name: TUS-18-B12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174190 is on microarray TOM1 spot ID 1-1-5.2.16.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7214 [cLEC-38-D22] Trace: SGN-T31724 EST: SGN-E209189 Direction: 5' Facility: TIGR
Clone: SGN-C174190 [TUS-18-B12] Trace: SGN-T197299 EST: SGN-E395973 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395974Length: 604 bp (885 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395974 [] (trimmed) CAGGATCAATGCAGAAATCCAGGTCGCAGAGGTGTCGGGGTTCACAACAATGGGAGAACTGCTACAAACAACAGAAAGGCAACTCGAGGAAACAA
ATGCTGATGGTCTCACTTTGACTGACCTTATCCATTTGGAAAACGAACTTCAAACTGCTCTAATACATCTCAGAGCTAGAAAGACACATTTGATG
CTTGAATCTGCTAAGGTTCTTCATGAGAAGGAAAAACTGCTGCTAGAGGAAAAGAAACATCTGGAGGACAATATAGCTAGTATCAAGAAAAACAC
AAAAGTGAATGAAATGTCTGACCTTCCAGCACCCCACATGATTTGTGGACAACAAAAAGTTACCCTGAATTTCTTCTAGTGATTATCGTCGTATT
CGTCGAAAAGCCTTGCTTCTGCACCAGAGGAACCTGCAAAATTAGTTTCAATAAAACTAATAATTATTCATCCTTGTTCTTGTTTCTAATGGATG
ATGATTAAAGTTAACTTCTCTACTTTGACATATTTACTAGAGGGTGACTTATATGCCTATTTTTCCCTCTTTTTAAGTTGTATAATGGAGTACTT
GAAATTGATTACCCTAACCATTATTGTTATGATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395974] SGN-U578955 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197300 [Download][View] Facility Assigned ID: FA0AAD6DA06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.948 Expected Error Rate: 0.0087 Quality Trim Threshold: 12.5