EST details — SGN-E395964

Search information 
Request: 395964Match: SGN-E395964
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174523Clone name: TUS-18-P9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174523 is on microarray TOM1 spot ID 1-1-8.4.16.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23166 [cLED-4-K3] Trace: SGN-T49404 EST: SGN-E231635 Direction: 5' Facility: TIGR
Clone: SGN-C174523 [TUS-18-P9] Trace: SGN-T199862 EST: SGN-E398536 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395964Length: 629 bp (887 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395964 [] (trimmed) CAGGATCAATGCAGAAATCCAGGTCGCAGAGGTGTCGGGGTTCACAACAATGGGAGAACTGCTACAAACAACAGAAAGGCAACTCGAGGAAACAA
ATGCTGATGGTCTCACTTTGACTGACCTTATCCATTTGGAAAACGAACTTCAAACTGCTCTAATACATCTCAGAGCTAGAAAGACACATTTGATG
CTTGAATCTGCTAAGGTTCTTCATGAGAAGGAAAAACTGCTGCTAGAGGAAAAGAAACATCTGGAGGACAATATAGCTAGTATCAAGAAAAACAC
AAAAGTGAATGAAATGTCTGACCTTCCAGCACCCCACATGATTTGTGGACAACAAAAAGTTACCCTGAATTTCTTCTAGTGATTATCGTCGTATT
CGTCGAAAAGCCTTGCTTCTGCACCAGAGGAACCTGCAAAATTAGTTTCAATAAAACTAATAATTATTCATCCTTGTTCTTGTTTCTAATGGATG
ATGATTAAAGTTAACTTCTCTACTTTGACATATTTACTAGAGGGTGACTTATATGCCTATTTTTCCCTCTTTTTAAGTTGTATAATGGAGTACTT
GAAATTGATTACCCTACACATTATTGTTATGATTTTTTTGGAAGAGTAATATTGCAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395964] SGN-U578955 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197290 [Download][View] Facility Assigned ID: FA0AAD6CH05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0079 Quality Trim Threshold: 14.5