EST details — SGN-E395935

Search information 
Request: 395935Match: SGN-E395935
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C174381Clone name: TUS-18-J11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174381 is on microarray TOM1 spot ID 1-1-6.2.16.19 [Order] [Tomato Microarray Database]
See unigene SGN-U578195 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C174381 [TUS-18-J11] Trace: SGN-T197260 EST: SGN-E395934 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395935Length: 610 bp (893 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395935 [] (trimmed) ATGACCCGAAGAAAGAACGAAGAGTACTGTGGGGATGGATTGGGGAAACTGACAGTGAATCTGCTGACCTGCAGAAGGGATGGGCATCTGTACAG
AGTATTCCAAGGACAGTGCTTTACGACAAGAAGACAGGGACACATCTACTTCAGTGGCCAGTGGAAGAAATTGAAAGCTTAAGAGTGGGTGATCC
TACTGTTAAGCAAGTCGATCTTCAACCAGGCTCAATTGAGCTACTCCGTGTTGACTCAGCTGCAGAGTTGGATATAGAAGCCTCATTTGAAGTGG
ACAAAGTCGCGCTTCAGGGAATAATTGAAGCAGATCATGTAGGTTTCAGTTGCTCTACTAGTGGAGGTGCTGCTAGCAGAGGCATTTTGGGACCA
TTTGGTGTCATAGTAATTGCTGATCAAACGCTATCTGAGCTAACGCCAGTTTACTTTTACATTTCTAAAGGAGCTGATGGTCGTGCAGAGACTCA
CTTCTGTGCTGATCAAACTAGATCCTCTGAGGCTCCGGGAGTTGGTAAACAAGTTTATGGTAGTTCAGTACCTGTGTTGGACGGGGAAAACATTC
AATGACATTATTGGTGGATCACTCAATTGTGGAGAGCTTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395935] SGN-U578195 Tomato 200607 Build 2 342 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197261 [Download][View] Facility Assigned ID: FA0AAD6CE06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0028 Quality Trim Threshold: 14.5