EST details — SGN-E395446

Search information 
Request: 395446Match: SGN-E395446
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C173678Clone name: TUS-16-M4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173678 is on microarray TOM1 spot ID 1-1-5.1.18.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C4196 [cLEC-23-N9] Trace: SGN-T28333 EST: SGN-E206374 Direction: 5' Facility: TIGR
Clone: SGN-C173678 [TUS-16-M4] Trace: SGN-T196771 EST: SGN-E395445 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395446Length: 663 bp (849 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395446 [] (trimmed) TTTAAATAAACAAAAAAAACAGAGCATTTTTTTCTCACTATTTTTGTGTTTCTTGAGGTGAAGAAGCCATTTGTTTGTGAAGAAATGGCAGTGTC
AAAAACTAACAAGAAGAAGCAGCAGTGTTACATAGCAGTACCATCTCAAATAATAAATTCAATTTCTTCTTCAGGGCTTCAGTCTCTGTTACTGT
CTCCAAAGAAAAAGAACCCATCTTTTTCTGTAAAGCTCAAACTTTTGCTTAATAATCCAAGATTCTGGGTTTTGTTTCTTTTTGTTTTTGGGTTT
GTTGGTATGTTGAAGTTATGGTTCAATTTTGAAACTTTACTTCCTTTTGCACCAAACCCATGTGGGATTTTTCAAGAAAAGACTTCATTTTTAAA
TGACCATCAAGTTTCTCAGCTCAGTATTGGAGCTCTGAATCTTGGAAATGGAGAAAAAGAAGAAGAAGGGGATGAAAAGAATGAGTTTTGGAAAC
AACCTGATGGGTTGGGTTATAAGCCTTGTTTGGATTTTAGTTCAGAGTATAGAAAAACAAGTTCGGATATTGTTAAAGGAAGGACTAGGTATTTG
ATGGTTGTGGTTTCTGGTGGAATGAATCAGCAGAGAAATCAGATTGTTGATGCTGTGGTGATTGCTAGGATTCTTGGTGCTGCTCTTGTTGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395446] SGN-U565042 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196772 [Download][View] Facility Assigned ID: FA0AAD4BG02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.931 Expected Error Rate: 0.0041 Quality Trim Threshold: 14.5