Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E395215

Search information 
Request: 395215Match: SGN-E395215
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184586Clone name: TUS-45-C16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184586 is on microarray TOM1 spot ID 1-1-1.3.14.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C82702 [cLET-20-P20] Trace: SGN-T107760 EST: SGN-E295346 Direction: 5' Facility: TIGR
Clone: SGN-C184586 [TUS-45-C16] Trace: SGN-T196540 EST: SGN-E395214 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E395215Length: 665 bp (834 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395215 [] (trimmed) AGTTACTCCGTCTCCGCCAGTACCGCCGGCAGCTTTTCATCTCCGATCCTCCGGTTCACGACGGCGATATCCTTCTCTAGACATACTCAAGAGTC
CATCCAGTTTGACCTAAGATGGACCAGTATGAAAAAGTTGAAAAGATTGGTGAAGGAACGTACGGCGTAGTGTACAAAGCTCGTGATCGTGTAAC
TAATGAAACTATTGCACTGAAGAAAATTCGGCTGGAGCAGGAAGACGAGGGTGTGCCAAGCACGGCTATTAGAGAAATCTCCCTCTTGAAAGAGA
TGCAGCATGGAAACATTGTGAGGTTGCAAGATGTGGTTCACAGTGAGAAGCGATTATATCTAGTGTTTGAATATCTCGACTTGGATTTGAAGAAG
CATATGGACTCATGTCCCGAGTTCTCTAAGGATCCGCGTCTTGTAAAAATGTTTTTGTATCAAATTCTCCGTGGAATTGCTTATTGTCATTCTCA
TAGAGTTCTTCACCGAGATCTGAAGCCTCAGAACTTGCTGATAGATAGACGTACAAACGTTCTAAAGCTTGCAGACTTTGGATTGGCTAGAGCAT
TCGGCATTCCTGTCAAAACTTTCACCCACGAAGTGGTGACGTTATGGTACAGGGCACCAGAAATACTGCTAGGATCACGCCACAACTCTACTCCT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395215] SGN-U572517 Tomato 200607 Build 2 31 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196541 [Download][View] Facility Assigned ID: FA0AAD33BB08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.990 Expected Error Rate: 0.0042 Quality Trim Threshold: 14.5