EST details — SGN-E394768

Search information 
Request: 394768Match: SGN-E394768
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183597Clone name: TUS-42-J11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183597 is on microarray TOM1 spot ID 1-1-6.2.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5990 [cLEC-33-O9] Trace: SGN-T30107 EST: SGN-E206835 Direction: 5' Facility: TIGR
Clone: SGN-C183597 [TUS-42-J11] Trace: SGN-T196200 EST: SGN-E394874 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394768Length: 529 bp (857 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394768 [] (trimmed) ATAACTATCAAACAATTTCTTCTTCATCTCTAACGAAAAGATCAATATCCTTGAAATCATCGAAACAACAGACCAATCAAAACAAGAAAATCAAA
TCCAGTACTGAAAAAACCAAGAAAATGGACGATTCAAAACACCCAATTTACCACGGGGTTCAAAAACGAAGCTGGGGAAAATGGGTGTCTGAAAT
TCACGAGCCGAGGAAAAAATCAAGGATTTGGCTTGGTACATTTTCTACAGCTGAAATGGCTGCCAGAGCACATGATGTAGCTGCAATTGCCATTA
AAGGTCACTTAACTTTACTCAATTTCCCTGAATTAGCTCATCAATTTCCTATACCATCTTCGAAATGCGCTAAAGATATTCAATCTGCAGCCGCA
AAGGCTGCAGCTTTGAATATTTCAGCAAGAAATTTTATGGAACAACAGAGTACAGATGAGTTAATGGAAATGCCCTGTTCTTCTGAAAAAACAAA
GTCAGCAGAATCATCTTTGAACGAGTAATAGCGAAGACCCTTTTCTTGATTTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394768] SGN-U568489 Tomato 200607 Build 2 6 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196094 [Download][View] Facility Assigned ID: FA0AAD30CE06RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.943 Expected Error Rate: 0.0157 Quality Trim Threshold: 14.5