EST details — SGN-E394754

Search information 
Request: 394754Match: SGN-E394754
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183513Clone name: TUS-42-F23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183513 is on microarray TOM1 spot ID 1-1-2.2.1.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183513 [TUS-42-F23] Trace: SGN-T195076 EST: SGN-E393750 Direction: 5' Facility: INRA
Clone: SGN-C183513 [TUS-42-F23] Trace: SGN-T200472 EST: SGN-E399593 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E394754Length: 709 bp (831 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394754 [] (trimmed) CTTTTTTTCCGCAATCAATTTCTCCAATGAATTAATTGTAAACTTGTTTAGGTAACAACATAAATAAACAAATTTTTCAGATCAACCCCCACACA
CCAATTTGATCTGAAATAAAAAATTGATTTTCAGGTCAAATGATAATGGCACTTGGTGGTAAAAAAAAAAAAAGATGGTAACTTTCAAGAAAAAA
GAAAATACAAGCACACAAAAAATAAATCTAAACACTTTCTTGACACTTGGTTTAACTAATTATCTGAAGCATCCAGCATGTATGGTTCACTTAAC
CATCCTACCAGAGCAGAAGAAATGCATCCCACACAGCAGCGGTTGCGAAAAGAGCTGGTATCATTATCTGTGCTTTAAATGAGTTGAGCAAATTT
GTTGAACTGCTGCGTACTGGAGCAGCTTTTGGAGGTGGAGGTGCCTTTTCAACATGAATAGCCACTTTCATGCCTCCATAACAGTATCCTTTTCC
ACTAGCGAAATAGTAGGTTTTAGTCACATTAAGCGGAACAACGTCCCTTCCTGCTCCAGTAGTCCAATTGTGGAGAGGATGATCAGTATTGCAGC
TCTCGTAGTCTGTCTTGTTTAGCTCAAGCACATTCATCTGGTTCCTGTCATACACAAAAACTGGGATGGGAGAAGGAAGAGTTACTAAACAACGA
CAAATAACTGAAGATATCTCAATATTTTACAAATCTAAGAGTTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394754] SGN-U586153 Tomato 200607 Build 2 29 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196080 [Download][View] Facility Assigned ID: FA0AAD30CC12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: No vector sequence detected
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0022 Quality Trim Threshold: 20.5