EST details — SGN-E394708
| Search information |
| Request: 394708 | Match: SGN-E394708 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183578 | Clone name: TUS-42-I16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183578 is on microarray TOM1 spot ID 1-1-1.1.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C73931 [cLER-7-C16] | Trace: SGN-T93440 | EST: SGN-E280977 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183578 [TUS-42-I16] | Trace: SGN-T196035 | EST: SGN-E394709 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183578 [TUS-42-I16] | Trace: SGN-T200458 | EST: SGN-E399578 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183578 [TUS-42-I16] | Trace: SGN-T200308 | EST: SGN-E399279 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394708 | Length: 519 bp (851 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394708 [] (trimmed)
CAAATTTAACTCATGTTATCCGATATTTAAAATCATAAAATTCACAAGTCTCCATTTATTTCGTAAACTTGGTGTCTAGTTAACTGATTGACACT
GATATTTGGTATAGGAAGTGATACCACAGCTTACGATAGTAAATATGACTATTTTCAATTCGTAATATCCACTTAATTAGTTTATAGCCCTGCTG
TTTGTTCCAATCTCTCCGTTAATTCCGGTAAGTGGACTAATATTCCCCATCTTCACCATAGCTGCAGCAAAATCACTTCTAAAACTCGCACCATT
GTTACTATAACTCCTCACCAACGCATCCTGAGATCCACCGTTAAACAATTCCTGATCCGAGTGAAGCAACCCACGCCGAACCACTAGGTTCTGAT
AATAATCATTATCGAACCGGTTCGGAGTCTGGATATCCAACGGGGCCAAATTGGCGTCGCCGCCGGAAGCAGGGCAGGTAGCCCTGCGCGTGGCG
GCGAACTGCGGGTCGATGTTGGTGTCNTTGTAGATCCGGTTTCC
GATATTTGGTATAGGAAGTGATACCACAGCTTACGATAGTAAATATGACTATTTTCAATTCGTAATATCCACTTAATTAGTTTATAGCCCTGCTG
TTTGTTCCAATCTCTCCGTTAATTCCGGTAAGTGGACTAATATTCCCCATCTTCACCATAGCTGCAGCAAAATCACTTCTAAAACTCGCACCATT
GTTACTATAACTCCTCACCAACGCATCCTGAGATCCACCGTTAAACAATTCCTGATCCGAGTGAAGCAACCCACGCCGAACCACTAGGTTCTGAT
AATAATCATTATCGAACCGGTTCGGAGTCTGGATATCCAACGGGGCCAAATTGGCGTCGCCGCCGGAAGCAGGGCAGGTAGCCCTGCGCGTGGCG
GCGAACTGCGGGTCGATGTTGGTGTCNTTGTAGATCCGGTTTCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394708] | SGN-U566251 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196034 [Download][View] | Facility Assigned ID: FA0AAD30BE08FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.989 | Expected Error Rate: 0.0207 | Quality Trim Threshold: 14.5 |
Working
