EST details — SGN-E394674
| Search information |
| Request: 394674 | Match: SGN-E394674 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183378 | Clone name: TUS-42-A8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183378 is on microarray TOM1 spot ID 1-1-1.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C23171 [cLED-4-K8] | Trace: SGN-T49259 | EST: SGN-E231490 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183378 [TUS-42-A8] | Trace: SGN-T195004 | EST: SGN-E393678 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183378 [TUS-42-A8] | Trace: SGN-T195005 | EST: SGN-E393679 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183378 [TUS-42-A8] | Trace: SGN-T196000 | EST: SGN-E399214 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183378 [TUS-42-A8] | Trace: SGN-T200266 | EST: SGN-E399213 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394674 | Length: 724 bp (881 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394674 [] (trimmed)
AATGAATACGTATAAGCATCAACAATATAGGCTACATGGAATCTTTCATCTTGAATGAACAAAAAAACAAGGTACTAAATGGATTAGCATTCGTT
GATGACACATCACAGAGAAAGGTTGCAGCAAGTAGGACCAGGCAAAAAATATTTACTTTTCCAGCAACTGGTAAATCTATAAATATGAACAGCAG
TCCCCTCTATTATCCAGGAAAATTTCTCGAGCCCCCAAAAGACATGGCTTTCCAAGACTCAACCAACTTCTGTAGACAATTGTCTGGTCAACTTC
ATGCAGCATACGTAACCTCGCAATCAAGGAAAACAAAACTGTGTGCTACCATCCTCCTCCGTTTCAATGTTTTCTTGACGTTCTAGCAATGTAGT
CATGCTTGAGAAGGTTTGCTCTCAAAAGCATTGATCTCACATCCCGATCGAATTCCTTGCCTGTCTGCAGCACCTTCTGGAAGGTTGCATTTCTC
TGATCAGCATGTCGTGCATACAAAATTTTGTTGTGTGAGTCAATTCGAGCCTGAATTTGGTTGTCAGTGATCAAAGATTCAAGTTCCTTTTCCAA
CCCGGCAACACTCGTCTTGAAAGCATTAGCCATCATATTCAAATCAACCGAGACAAATGGGTGGGTATACTGTATCAAAGCTTTGCTACGGATTT
GATCATACAGTGTCTCGACATGATCATGCAAATGGATGTCAAGCAACAGATTTGCTTTA
GATGACACATCACAGAGAAAGGTTGCAGCAAGTAGGACCAGGCAAAAAATATTTACTTTTCCAGCAACTGGTAAATCTATAAATATGAACAGCAG
TCCCCTCTATTATCCAGGAAAATTTCTCGAGCCCCCAAAAGACATGGCTTTCCAAGACTCAACCAACTTCTGTAGACAATTGTCTGGTCAACTTC
ATGCAGCATACGTAACCTCGCAATCAAGGAAAACAAAACTGTGTGCTACCATCCTCCTCCGTTTCAATGTTTTCTTGACGTTCTAGCAATGTAGT
CATGCTTGAGAAGGTTTGCTCTCAAAAGCATTGATCTCACATCCCGATCGAATTCCTTGCCTGTCTGCAGCACCTTCTGGAAGGTTGCATTTCTC
TGATCAGCATGTCGTGCATACAAAATTTTGTTGTGTGAGTCAATTCGAGCCTGAATTTGGTTGTCAGTGATCAAAGATTCAAGTTCCTTTTCCAA
CCCGGCAACACTCGTCTTGAAAGCATTAGCCATCATATTCAAATCAACCGAGACAAATGGGTGGGTATACTGTATCAAAGCTTTGCTACGGATTT
GATCATACAGTGTCTCGACATGATCATGCAAATGGATGTCAAGCAACAGATTTGCTTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394674] | SGN-U573718 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196000 [Download][View] | Facility Assigned ID: FA0AAD30BA04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0052 | Quality Trim Threshold: 14.5 |
Working
