EST details — SGN-E394611
| Search information |
| Request: 394611 | Match: SGN-E394611 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183377 | Clone name: TUS-42-A7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183377 is on microarray TOM1 spot ID 1-1-2.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C70462 [cLER-14-P10] | Trace: SGN-T94972 | EST: SGN-E281713 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183377 [TUS-42-A7] | Trace: SGN-T195936 | EST: SGN-E394610 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183377 [TUS-42-A7] | Trace: SGN-T195936 | EST: SGN-E399120 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183377 [TUS-42-A7] | Trace: SGN-T195937 | EST: SGN-E399121 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183377 [TUS-42-A7] | Trace: SGN-T199400 | EST: SGN-E398074 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183377 [TUS-42-A7] | Trace: SGN-T199567 | EST: SGN-E398241 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394611 | Length: 683 bp (869 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394611 [] (trimmed)
CGACTAATTTTACTTGATGTTCATTTCCCCTTTGATCACTGCAGAAAACCTATTTACCTCATCAGGCAACTTGCTCAGGCATGTTTATTAAAACG
TGTTTAGCAGTGGATGGCCAGAGGCTACATATATAAGTTATTGGGATACCAAGCAAACAAGACTTCATACTAAAGAAGTACAGGTAAATTAAATA
AGCCTACAGACGTTGAGATGACATTCTTCTTCTTCTTAGTCGCTCAGCTACGATGAAGGAGAGTTCAAGAGACTGAGATGCATTCAATCTTGGGT
CACAATGAGTGTGGTAGCGAGAGCCCAAATCGTCATAGGTTACTGTTCGTGATCCACCAATGCATTCAGTCACATTTTGCCCTGTCATTTCAAGG
TGAATACCACCAGGGTGGCTTCCTTCTTGCTCATGCACATCGAAAAAAGCTCGGACCTCAGCCAGGATTGAATCGAAAGCACGGGTTTTGAGTCC
ACATGGTGCCTTGATGGTATTCCCGTGCATTGGATCACAAACCCATGTCACAATCTGACCAGCGCCCCGTACAGCCCTGACCAAGTGGGAAAGTT
TTACTCTCATGTTCTCGGCACCCATTCTAACAATTACAGTAATTCTTCCAGGCTTATTGGCAGGGTTCAGGATGTCAATGAGCTTAATTAGCTCT
TTTGGATCCATTTTTTGA
TGTTTAGCAGTGGATGGCCAGAGGCTACATATATAAGTTATTGGGATACCAAGCAAACAAGACTTCATACTAAAGAAGTACAGGTAAATTAAATA
AGCCTACAGACGTTGAGATGACATTCTTCTTCTTCTTAGTCGCTCAGCTACGATGAAGGAGAGTTCAAGAGACTGAGATGCATTCAATCTTGGGT
CACAATGAGTGTGGTAGCGAGAGCCCAAATCGTCATAGGTTACTGTTCGTGATCCACCAATGCATTCAGTCACATTTTGCCCTGTCATTTCAAGG
TGAATACCACCAGGGTGGCTTCCTTCTTGCTCATGCACATCGAAAAAAGCTCGGACCTCAGCCAGGATTGAATCGAAAGCACGGGTTTTGAGTCC
ACATGGTGCCTTGATGGTATTCCCGTGCATTGGATCACAAACCCATGTCACAATCTGACCAGCGCCCCGTACAGCCCTGACCAAGTGGGAAAGTT
TTACTCTCATGTTCTCGGCACCCATTCTAACAATTACAGTAATTCTTCCAGGCTTATTGGCAGGGTTCAGGATGTCAATGAGCTTAATTAGCTCT
TTTGGATCCATTTTTTGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394611] | SGN-U581552 | Tomato 200607 | Build 2 | 79 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195937 [Download][View] | Facility Assigned ID: FA0AAD30AA04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
