EST details — SGN-E394494
| Search information |
| Request: 394494 | Match: SGN-E394494 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183263 | Clone name: TUS-41-L13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183263 is on microarray TOM1 spot ID 1-1-4.4.3.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C30990 [cLEG-11-D19] | Trace: SGN-T65961 | EST: SGN-E250178 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183263 [TUS-41-L13] | Trace: SGN-T195187 | EST: SGN-E393861 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183263 [TUS-41-L13] | Trace: SGN-T195631 | EST: SGN-E394305 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183263 [TUS-41-L13] | Trace: SGN-T195820 | EST: SGN-E398869 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183263 [TUS-41-L13] | Trace: SGN-T200157 | EST: SGN-E398870 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394494 | Length: 615 bp (854 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394494 [] (trimmed)
AAGAGGAAGAGTCCAGTTGAAGCGAATAGAGAACAAAATTAACCGTCAAGTTACCTTCTCGAAACGTCGATCTGGTTTGCTGAAGAAAGCCCATG
AGATCTCTGTGCTTTGTGATGCTGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCAACGATTCCTGCATGGAGAGG
ATACTTGAAAGATATGAAAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGCTGGACCCTTGAACATGCAAA
ACTTAAGGCCAGACTTGAGGTTCTGCAGAGGAACCAAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATGAAGGAACTTCAGAATCTGG
AGCACCAGCTTGATTCAGCTCTTAAACACATTCGATCAAGAAAGAATCAATTTGATGCATGAAGTCCATTTCTGTGCTTCCAAAAAAGGACAGAG
CATTGCAGGAGCAAAACAACCAGCTTTTCGAAGAAGGGTGAAGGAGAGGGAAAAAGAGGTGGCACAGCAAAATCAGTGGGAAATCAACTCATCTT
CATTTGTTTTGCCACACAACTGGACTCCCCTCCCCTTGGGGAAAC
AGATCTCTGTGCTTTGTGATGCTGAGGTTGGTTTGATTGTTTTTTCTACTAAAGGAAAACTCTTTGAATATGCCAACGATTCCTGCATGGAGAGG
ATACTTGAAAGATATGAAAGATACTCATTTGCTGAGAAACAGCTTGTTCCTACTGATCATACCTCCCCGGTAAGCTGGACCCTTGAACATGCAAA
ACTTAAGGCCAGACTTGAGGTTCTGCAGAGGAACCAAAAGCATTATGTGGGAGAAGATTTGGAGTCCTTAAGTATGAAGGAACTTCAGAATCTGG
AGCACCAGCTTGATTCAGCTCTTAAACACATTCGATCAAGAAAGAATCAATTTGATGCATGAAGTCCATTTCTGTGCTTCCAAAAAAGGACAGAG
CATTGCAGGAGCAAAACAACCAGCTTTTCGAAGAAGGGTGAAGGAGAGGGAAAAAGAGGTGGCACAGCAAAATCAGTGGGAAATCAACTCATCTT
CATTTGTTTTGCCACACAACTGGACTCCCCTCCCCTTGGGGAAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394494] | SGN-U578128 | Tomato 200607 | Build 2 | 67 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195820 [Download][View] | Facility Assigned ID: FA0AAD29CF07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0096 | Quality Trim Threshold: 14.5 |
Working
