EST details — SGN-E394380
| Search information |
| Request: 394380 | Match: SGN-E394380 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172970 | Clone name: TUS-14-O16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172970 is on microarray TOM1 spot ID 1-1-1.3.20.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14388 [cLEC-7-M10] | Trace: SGN-T25435 | EST: SGN-E202153 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172970 [TUS-14-O16] | Trace: SGN-T195263 | EST: SGN-E393937 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172970 [TUS-14-O16] | Trace: SGN-T195412 | EST: SGN-E394086 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172970 [TUS-14-O16] | Trace: SGN-T195705 | EST: SGN-E394379 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172970 [TUS-14-O16] | Trace: SGN-T195705 | EST: SGN-E399106 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172970 [TUS-14-O16] | Trace: SGN-T195706 | EST: SGN-E399107 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394380 | Length: 592 bp (860 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394380 [] (trimmed)
TTTTTTAATCCTCAAAAGGCCATTAGTGCAAAAACATCTTAGCCCAATCACAATGTTCATTCATATGGCTTCTCCAATGAGGCCCAAACCATATC
AAGTACAAAGCCCAAAAGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATC
AAAATAAAATAGCCAAAGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATAC
TCACTTATCTAGGAAAAACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCA
GCCAACATAAGCTCCGGGAGGACGCTTGTTTCTGCAGTTCCATCAAGGGCGTTGGGCAATCCCAACGCTCGTAGGGCGAGGTGAGCTGCCTTCTG
TCCTGATATCATCATAGCTCCAAAAGTTGGACCCATTCGTGGTGCTCCATCAATTTCAGCAACTTCCATTCCTGTGACAATCATACCAGGTACGA
CCTCTCTGGTAAGTCTAACAAT
AAGTACAAAGCCCAAAAGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATC
AAAATAAAATAGCCAAAGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATAC
TCACTTATCTAGGAAAAACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCA
GCCAACATAAGCTCCGGGAGGACGCTTGTTTCTGCAGTTCCATCAAGGGCGTTGGGCAATCCCAACGCTCGTAGGGCGAGGTGAGCTGCCTTCTG
TCCTGATATCATCATAGCTCCAAAAGTTGGACCCATTCGTGGTGCTCCATCAATTTCAGCAACTTCCATTCCTGTGACAATCATACCAGGTACGA
CCTCTCTGGTAAGTCTAACAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394380] | SGN-U580030 | Tomato 200607 | Build 2 | 241 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195706 [Download][View] | Facility Assigned ID: FA0AAD2BH08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0006 | Quality Trim Threshold: 20.5 |
Working
