EST details — SGN-E394346
| Search information |
| Request: 394346 | Match: SGN-E394346 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172766 | Clone name: TUS-14-G4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172766 is on microarray TOM1 spot ID 1-1-5.3.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10915 [cLEC-6-K12] | Trace: SGN-T23969 | EST: SGN-E202308 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172766 [TUS-14-G4] | Trace: SGN-T195786 | EST: SGN-E394460 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394346 | Length: 207 bp (889 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394346 [] (trimmed)
AAGCTGCTTTTATTAAGCCCATCCAAACGGGCTCAAAGTATTACATAGTGAGATTAACATAGAAACACCAAATCATACAATCTAGAGAGAGATTA
ATATTGGATACAAAACACATATATAGTAGTATCTTTTATTTATTTATATTAGACAAAACATAGAGTCCATAGGTGCCTAAAAAAGTTAAATTTGA
TTAGTAGTGGTGGTGGT
ATATTGGATACAAAACACATATATAGTAGTATCTTTTATTTATTTATATTAGACAAAACATAGAGTCCATAGGTGCCTAAAAAAGTTAAATTTGA
TTAGTAGTGGTGGTGGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394346] | SGN-U577499 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195672 [Download][View] | Facility Assigned ID: FA0AAD2BD02RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.904 | Expected Error Rate: 0.0011 | Quality Trim Threshold: 14.5 |
Working
