EST details — SGN-E394252
| Search information |
| Request: 394252 | Match: SGN-E394252 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172783 | Clone name: TUS-14-G21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172783 is on microarray TOM1 spot ID 1-1-4.3.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10940 [cLEC-6-L13] | Trace: SGN-T24006 | EST: SGN-E202345 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172783 [TUS-14-G21] | Trace: SGN-T195310 | EST: SGN-E393984 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172783 [TUS-14-G21] | Trace: SGN-T195578 | EST: SGN-E398941 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172783 [TUS-14-G21] | Trace: SGN-T195748 | EST: SGN-E394422 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394252 | Length: 547 bp (861 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394252 [] (trimmed)
TTGACTCTCGATTCAAATAGAACCTATTAAAAAAAGCAAGCACGTGAAATAAATATAGTAAACAAGTGGAGAAACAATAATAGCAAATAACAAGT
AATACGAAAACCAAAAAGACACTAAAACTGAAAAACAAGAGAACTAAACTGATTAAAAGATTTAATAGACTCGCGATTCAAATAGAGCCTATTAA
AAAGTCAAGCACGTGAAATAAATACAGTAAACAAGTGGAAAAACAATAATAGCAACAACAAGTAATACGATAACCAAAAAGACACTAACACTGAA
AAACAAGACCTGATCAAAAAATTTATACGAACACACAATTACATACTGACCTCCTATCATAATCCTCGTATTTAACTTGTTATAAGGTAAATAGA
GTTTTATAAATATAGGAACAGATAATAGTATAGCGATTATCACTGATATCTAAAATGAAAGAACCATTGGAACAATGTAAATCAGGATATTGCTG
CACCAGAGGAATATTTATTTTAAACCCAATGTTTGAAGCAAACATGAAAATATAGTAATCCTTGGTGATAAT
AATACGAAAACCAAAAAGACACTAAAACTGAAAAACAAGAGAACTAAACTGATTAAAAGATTTAATAGACTCGCGATTCAAATAGAGCCTATTAA
AAAGTCAAGCACGTGAAATAAATACAGTAAACAAGTGGAAAAACAATAATAGCAACAACAAGTAATACGATAACCAAAAAGACACTAACACTGAA
AAACAAGACCTGATCAAAAAATTTATACGAACACACAATTACATACTGACCTCCTATCATAATCCTCGTATTTAACTTGTTATAAGGTAAATAGA
GTTTTATAAATATAGGAACAGATAATAGTATAGCGATTATCACTGATATCTAAAATGAAAGAACCATTGGAACAATGTAAATCAGGATATTGCTG
CACCAGAGGAATATTTATTTTAAACCCAATGTTTGAAGCAAACATGAAAATATAGTAATCCTTGGTGATAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394252] | SGN-U565588 | Tomato 200607 | Build 2 | 113 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195578 [Download][View] | Facility Assigned ID: FA0AAD2AD11RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.892 | Expected Error Rate: 0.0068 | Quality Trim Threshold: 14.5 |
Working
