EST details — SGN-E394244
| Search information |
| Request: 394244 | Match: SGN-E394244 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172733 | Clone name: TUS-14-E19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172733 is on microarray TOM1 spot ID 1-1-6.1.20.10 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10868 [cLEC-6-I10] | Trace: SGN-T23963 | EST: SGN-E202302 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172733 [TUS-14-E19] | Trace: SGN-T195114 | EST: SGN-E393788 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172733 [TUS-14-E19] | Trace: SGN-T195569 | EST: SGN-E394243 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172733 [TUS-14-E19] | Trace: SGN-T195569 | EST: SGN-E399520 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172733 [TUS-14-E19] | Trace: SGN-T200176 | EST: SGN-E398927 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394244 | Length: 677 bp (849 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394244 [] (trimmed)
CGAAACAAAATCTCTCTCAATTTACAGAGAAGAAATATAGTTTTAAGGGAGTATTTTCTCTTATTGTTTCCCTTAAGGAATCGGAAAACCCAGGA
AGAAGAAACTTGTTTTCTTTATTAATTGCCTATAAATCACCCCTTTCCCTTTGAAGGTTGATTGAAATAGTCTTTGGAATTTTCTTTTTCTTTCT
TGGGTGTATTTATTTGCACAAATTTTGATTTCCTTTTTCGTTAAAATGGGAACAGAAGTTTTGCGGCCACAAAATTGTTTGATTGACAGGTTCAG
GGAACCACAACCGGCGGCGGCGTTTCATCGTCGGAAAAATAATGGGTATTATAATAACAACGGTTACCGGAAACCGGTTGTTAGAACGGAGAAAA
AGAAGTTGAACAGCAAGATCCAGAACCAATCTGAGCCGTCGATTTCTAGGAGATCTGAGGAGTCGAAACCGGTTCAGATCCCTGGGAGAGTTACA
CCGGTGGTAGACGGCGGAATCGTGATGGGTCAGGTAATGATTTTGAGAAGGGGAGAGTCGTTGGATTCTCTGAACCCTAATATCAGGAAAGAGAA
CAAAACAACGTCGTCGGGTAAGAAGAAGAAACAACCGGCGAGTGGTAGCGGTGATGAATTGACGACAGTTTACGGTACCGGAAGATTAGGTCCGG
AACAACCCGGAA
AGAAGAAACTTGTTTTCTTTATTAATTGCCTATAAATCACCCCTTTCCCTTTGAAGGTTGATTGAAATAGTCTTTGGAATTTTCTTTTTCTTTCT
TGGGTGTATTTATTTGCACAAATTTTGATTTCCTTTTTCGTTAAAATGGGAACAGAAGTTTTGCGGCCACAAAATTGTTTGATTGACAGGTTCAG
GGAACCACAACCGGCGGCGGCGTTTCATCGTCGGAAAAATAATGGGTATTATAATAACAACGGTTACCGGAAACCGGTTGTTAGAACGGAGAAAA
AGAAGTTGAACAGCAAGATCCAGAACCAATCTGAGCCGTCGATTTCTAGGAGATCTGAGGAGTCGAAACCGGTTCAGATCCCTGGGAGAGTTACA
CCGGTGGTAGACGGCGGAATCGTGATGGGTCAGGTAATGATTTTGAGAAGGGGAGAGTCGTTGGATTCTCTGAACCCTAATATCAGGAAAGAGAA
CAAAACAACGTCGTCGGGTAAGAAGAAGAAACAACCGGCGAGTGGTAGCGGTGATGAATTGACGACAGTTTACGGTACCGGAAGATTAGGTCCGG
AACAACCCGGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394244] | SGN-U579174 | Tomato 200607 | Build 2 | 106 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195570 [Download][View] | Facility Assigned ID: FA0AAD2AC10RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.954 | Expected Error Rate: 0.0073 | Quality Trim Threshold: 14.5 |
Working
