EST details — SGN-E394239

Search information 
Request: 394239Match: SGN-E394239
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172719Clone name: TUS-14-E5
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172719 is on microarray TOM1 spot ID 1-1-4.1.20.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10849 [cLEC-6-H12] Trace: SGN-T24217 EST: SGN-E202556 Direction: 5' Facility: TIGR
Clone: SGN-C172719 [TUS-14-E5] Trace: SGN-T195109 EST: SGN-E393783 Direction: 3' Facility: INRA
Clone: SGN-C172719 [TUS-14-E5] Trace: SGN-T195564 EST: SGN-E394238 Direction: 3' Facility: INRA
Clone: SGN-C172719 [TUS-14-E5] Trace: SGN-T195564 EST: SGN-E398918 Direction: 3' Facility: INRA
Clone: SGN-C172719 [TUS-14-E5] Trace: SGN-T200171 EST: SGN-E398919 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394239Length: 174 bp (901 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E394239 [] (trimmed) CAGGTCGTAAGTAGCCTGAGAGAGCAACTTCATGACCACATCAACGCTGAGATTGTTACTGGAACAATCTCTCATAAAGAGGACGCTATGCATTA
TCTCACTTGGACCTACTTGTTTCGTAGATTGATGGTTAACCCAGCTTACTATGGCCTAGAGCATGCAAATCCTGCGATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394239] SGN-U562830 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195565 [Download][View] Facility Assigned ID: FA0AAD2AC03RM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.961 Expected Error Rate: 0.0121 Quality Trim Threshold: 14.5