EST details — SGN-E394220
| Search information |
| Request: 394220 | Match: SGN-E394220 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172625 | Clone name: TUS-14-A7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172625 is on microarray TOM1 spot ID 1-1-2.1.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10707 [cLEC-6-A2] | Trace: SGN-T24103 | EST: SGN-E202442 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172625 [TUS-14-A7] | Trace: SGN-T195090 | EST: SGN-E393764 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172625 [TUS-14-A7] | Trace: SGN-T195546 | EST: SGN-E398888 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172625 [TUS-14-A7] | Trace: SGN-T195731 | EST: SGN-E394405 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172625 [TUS-14-A7] | Trace: SGN-T195731 | EST: SGN-E398887 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172625 [TUS-14-A7] | Trace: SGN-T199538 | EST: SGN-E398212 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394220 | Length: 630 bp (858 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394220 [] (trimmed)
ACGTTCGAATATGGTATCCAATTATTTGGTTTGGAGTTTATAGTTTACAAAATAAGGAACTTACTTGTAATTTTTAATGAAACCCCAAAACAGGG
TTTTGGAAAATCAAACAAAAATCCAATATTACTTTGGATTTTGAAACAAAATACAAAAAATAAAAACACATAATGAAACTACAAGTACAGTATTA
GTTAGTAATTATTATTATTATTATTATTAGCGCGCTAGTTTCAAATCTCTTTTTCAGTGTCTTCTTGTTTGTCACCGTTCCATAAGTCTGAAAGT
GATGGAAGCTTGATCTCGCCGCTATGTGAGAGTGGAATTGTGAAATCTCCGATGACTGGAAGATCAATAGCGAGACCTAATTCCAGTTTATAGTC
AATGTCCCAATCTTTACCAATATCCTTACCCAAACTCACTAGCATACTGTGAGGTACCTTCACTGGCACATCTAAAATAGTTGTGTCATTTGCCT
TTATATTCCCTGGATCTGGAATTGTTCCTGATACTATAACCCTGCATTAATTATTTCACAAAAAAAAATAAAAAATCATCAGTATATAACCCAAA
ATCGAGGAAACATACTAACACGCATGANAAAAAGTACCTGCCGGAGCATTTGAGAGTGTA
TTTTGGAAAATCAAACAAAAATCCAATATTACTTTGGATTTTGAAACAAAATACAAAAAATAAAAACACATAATGAAACTACAAGTACAGTATTA
GTTAGTAATTATTATTATTATTATTATTAGCGCGCTAGTTTCAAATCTCTTTTTCAGTGTCTTCTTGTTTGTCACCGTTCCATAAGTCTGAAAGT
GATGGAAGCTTGATCTCGCCGCTATGTGAGAGTGGAATTGTGAAATCTCCGATGACTGGAAGATCAATAGCGAGACCTAATTCCAGTTTATAGTC
AATGTCCCAATCTTTACCAATATCCTTACCCAAACTCACTAGCATACTGTGAGGTACCTTCACTGGCACATCTAAAATAGTTGTGTCATTTGCCT
TTATATTCCCTGGATCTGGAATTGTTCCTGATACTATAACCCTGCATTAATTATTTCACAAAAAAAAATAAAAAATCATCAGTATATAACCCAAA
ATCGAGGAAACATACTAACACGCATGANAAAAAGTACCTGCCGGAGCATTTGAGAGTGTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394220] | SGN-U578486 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195546 [Download][View] | Facility Assigned ID: FA0AAD2AA04RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
