EST details — SGN-E394144
| Search information |
| Request: 394144 | Match: SGN-E394144 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183375 | Clone name: TUS-42-A5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183375 is on microarray TOM1 spot ID 1-1-4.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183375 [TUS-42-A5] | Trace: SGN-T194905 | EST: SGN-E393579 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183375 [TUS-42-A5] | Trace: SGN-T195468 | EST: SGN-E394142 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183375 [TUS-42-A5] | Trace: SGN-T195468 | EST: SGN-E399118 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183375 [TUS-42-A5] | Trace: SGN-T195469 | EST: SGN-E394143 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183375 [TUS-42-A5] | Trace: SGN-T195470 | EST: SGN-E399119 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394144 | Length: 667 bp (878 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394144 [] (trimmed)
CCACCAAAGTGACAAATGCTGATCAATCACCTGTACATTAATAACTGGCATATCAAATGTGTGTGTACTTAACAACTGAAAATTTTGCTAACCCT
TAAAACACCTAAATAATACCAAAATGATGAATGATTGATAACTTTTAGGTCAGTATGTATTTATATAATTACAAAAGGAAAATTATCCTTATCCT
TCCCAATTCAATTCCTCAATTGATTCAAAACAAACATGTGGACACCCCCTTTCTGGTTCACCCTTTGTCCAAAAAATTTTCAGGTCACCTCTCTT
TCCCCCCACCATCAAAAAGGTCCCAAGGGTAAATGGGACAATGTAAAAAAGTGCAGGTTGGCCATGACCATCCATTAATTTCAATGCTACATATG
TTATAAAAAAACCTAATCCATATGCAATCATTGCCCACAAAAATTAACCACCTCAAAAATTCTTCTTTGCAGGCCAATCATACCTAAGTGAAAAT
GCTACTACCATTCCAGGCAATAGGATGTCACCAAACCCAATAATGCTGTAACCACCCCATGGATCAAATAGTCGTGAAATCTTCACCACCATTGA
AATACCATCTTCTCCACTTTTATCACCACAAGCTACCACAATCATCACACTTTCATGGAAAAAACTCTAAAAAACAAATACCCAAAATATGTCGA
AA
TAAAACACCTAAATAATACCAAAATGATGAATGATTGATAACTTTTAGGTCAGTATGTATTTATATAATTACAAAAGGAAAATTATCCTTATCCT
TCCCAATTCAATTCCTCAATTGATTCAAAACAAACATGTGGACACCCCCTTTCTGGTTCACCCTTTGTCCAAAAAATTTTCAGGTCACCTCTCTT
TCCCCCCACCATCAAAAAGGTCCCAAGGGTAAATGGGACAATGTAAAAAAGTGCAGGTTGGCCATGACCATCCATTAATTTCAATGCTACATATG
TTATAAAAAAACCTAATCCATATGCAATCATTGCCCACAAAAATTAACCACCTCAAAAATTCTTCTTTGCAGGCCAATCATACCTAAGTGAAAAT
GCTACTACCATTCCAGGCAATAGGATGTCACCAAACCCAATAATGCTGTAACCACCCCATGGATCAAATAGTCGTGAAATCTTCACCACCATTGA
AATACCATCTTCTCCACTTTTATCACCACAAGCTACCACAATCATCACACTTTCATGGAAAAAACTCTAAAAAACAAATACCCAAAATATGTCGA
AA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394144] | SGN-U567575 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195470 [Download][View] | Facility Assigned ID: FA0AAD30AA03RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.914 | Expected Error Rate: 0.0181 | Quality Trim Threshold: 14.5 |
Working
