EST details — SGN-E394141
| Search information |
| Request: 394141 | Match: SGN-E394141 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183371 | Clone name: TUS-42-A1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183371 is on microarray TOM1 spot ID 1-1-8.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C71997 [cLER-19-N13] | Trace: SGN-T96613 | EST: SGN-E285041 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183371 [TUS-42-A1] | Trace: SGN-T195935 | EST: SGN-E394609 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183371 [TUS-42-A1] | Trace: SGN-T196629 | EST: SGN-E395303 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183371 [TUS-42-A1] | Trace: SGN-T196629 | EST: SGN-E399115 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183371 [TUS-42-A1] | Trace: SGN-T200447 | EST: SGN-E399551 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394141 | Length: 664 bp (833 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394141 [] (trimmed)
CTATCAATGTGATACTGGGGGAATATATATATATCTTTTTAATGTTAATTAATCGAAATTGAGAAGCTGAAATTTCACCTATAACATCAAGTATA
CACGTTACCTATGCCCTGGTTGTTTATAGCTGAATTTCAAGCCCCTTTTCTTATTCTATTATTACACCCCTAATGAAATGATTAAGGAACTTATT
AAAGCAAAACAACTAAATTCTTATTTTGCAATCTTTTCTTGTCATTCACAAGCGATAATTCTAAATCTTTTTCCTTCTCTCCATTTTATACAAGC
TCTTGGGAAAATTGTATATAATAGCAAACTAGTAATCTAACTAAATGGAGTAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGCTA
AAGTTTGTCAGGCGTCTCCCTCCCAAAAATCTCGCTCGCCACTCTCCATTCTCGCTCGCCTATCTCGCTATATACACAGAAGTGTATAAATTCTG
TTTCTATTTTGTATAAAGCGAGAGAAAATTGTATATACACATGTAAAAATATATATCTTCGTGTTATACACTTAATTATACAAATTACAAACATT
TTACTTCAAATATTGCAAAGAAAAAGGCCAACGAATTATACAATTGTGAATTATATAATTGCAATGAAATACAATTTTCTCTAACTTTATACAA
CACGTTACCTATGCCCTGGTTGTTTATAGCTGAATTTCAAGCCCCTTTTCTTATTCTATTATTACACCCCTAATGAAATGATTAAGGAACTTATT
AAAGCAAAACAACTAAATTCTTATTTTGCAATCTTTTCTTGTCATTCACAAGCGATAATTCTAAATCTTTTTCCTTCTCTCCATTTTATACAAGC
TCTTGGGAAAATTGTATATAATAGCAAACTAGTAATCTAACTAAATGGAGTAGCTAGAGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGCTA
AAGTTTGTCAGGCGTCTCCCTCCCAAAAATCTCGCTCGCCACTCTCCATTCTCGCTCGCCTATCTCGCTATATACACAGAAGTGTATAAATTCTG
TTTCTATTTTGTATAAAGCGAGAGAAAATTGTATATACACATGTAAAAATATATATCTTCGTGTTATACACTTAATTATACAAATTACAAACATT
TTACTTCAAATATTGCAAAGAAAAAGGCCAACGAATTATACAATTGTGAATTATATAATTGCAATGAAATACAATTTTCTCTAACTTTATACAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394141] | SGN-U580684 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195467 [Download][View] | Facility Assigned ID: FA0AAD30AA01FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.930 | Expected Error Rate: 0.0085 | Quality Trim Threshold: 14.5 |
Working
