EST details — SGN-E394088
| Search information |
| Request: 394088 | Match: SGN-E394088 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172978 | Clone name: TUS-14-O24 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172978 is on microarray TOM1 spot ID 1-1-1.3.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14408 [cLEC-7-M9] | Trace: SGN-T25400 | EST: SGN-E202118 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172978 [TUS-14-O24] | Trace: SGN-T195266 | EST: SGN-E393940 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172978 [TUS-14-O24] | Trace: SGN-T195414 | EST: SGN-E399113 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172978 [TUS-14-O24] | Trace: SGN-T195415 | EST: SGN-E394089 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172978 [TUS-14-O24] | Trace: SGN-T195710 | EST: SGN-E394384 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172978 [TUS-14-O24] | Trace: SGN-T195710 | EST: SGN-E399114 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394088 | Length: 686 bp (844 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394088 [] (trimmed)
AACAAAACCAAAAACCAAAAAAAGAAAAAATTAAACTTCTTTTCGAGGCCTTCGTTAGCTGATATTTGTTTAGTCATTCAGATAGTGATTCACGT
AGAGATGATTGCAACATGGAGAAAAAAGAGAACAGAGAAAAGAGTAACAAAGAGAGGATTTATGAAGAAAACAAACATGGAGTTAGTGATACCAA
GCCAATTTACATGTCCAATTTCATTAGATTTAATGAAAGATCCAGTGACTTTATCAACAGGGATTACGTATGATCGAGAAAACATCGAAAAATGG
ATAAATGAAGGTGGGAATCAAACATGTCCTATCACAAATCAAGAACTGAAGTCCTATGGAAATGGCATTGTTGATCCTGTTTTAATTCCAAATCA
CAATATTCGAAAAATGATTCAACAATGGTGTGTCGAAAATAAGGAACATGGGATTGATAGGATTCCAACTCCAAGAATCCCGATTTCATCATCTG
ATGTCTCTGAATTACTCGCGAAAATAACAAACTCGAGCAAGTTAGAGATGGAGAAATCAAGTTCATGTGAAGAATTAGTCACTAGTGTGAAGAAT
TTAGCTAGTGAAAGTGATCGAAACAAATGTTGTTTCGTCACTAATGGCATAGGAAAGGTGTTATCATCAGCATTTCTTGAACTATCAAAGGGAAA
AAACGCGAAAAATGCTTCAAC
AGAGATGATTGCAACATGGAGAAAAAAGAGAACAGAGAAAAGAGTAACAAAGAGAGGATTTATGAAGAAAACAAACATGGAGTTAGTGATACCAA
GCCAATTTACATGTCCAATTTCATTAGATTTAATGAAAGATCCAGTGACTTTATCAACAGGGATTACGTATGATCGAGAAAACATCGAAAAATGG
ATAAATGAAGGTGGGAATCAAACATGTCCTATCACAAATCAAGAACTGAAGTCCTATGGAAATGGCATTGTTGATCCTGTTTTAATTCCAAATCA
CAATATTCGAAAAATGATTCAACAATGGTGTGTCGAAAATAAGGAACATGGGATTGATAGGATTCCAACTCCAAGAATCCCGATTTCATCATCTG
ATGTCTCTGAATTACTCGCGAAAATAACAAACTCGAGCAAGTTAGAGATGGAGAAATCAAGTTCATGTGAAGAATTAGTCACTAGTGTGAAGAAT
TTAGCTAGTGAAAGTGATCGAAACAAATGTTGTTTCGTCACTAATGGCATAGGAAAGGTGTTATCATCAGCATTTCTTGAACTATCAAAGGGAAA
AAACGCGAAAAATGCTTCAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394088] | SGN-U565388 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195414 [Download][View] | Facility Assigned ID: FA0AAD2BH12FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.929 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 14.5 |
Working
