EST details — SGN-E394079
| Search information |
| Request: 394079 | Match: SGN-E394079 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172926 | Clone name: TUS-14-M20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172926 is on microarray TOM1 spot ID 1-1-5.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14297 [cLEC-7-H2] | Trace: SGN-T25490 | EST: SGN-E202208 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172926 [TUS-14-M20] | Trace: SGN-T195406 | EST: SGN-E394080 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172926 [TUS-14-M20] | Trace: SGN-T195700 | EST: SGN-E394374 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172926 [TUS-14-M20] | Trace: SGN-T195700 | EST: SGN-E399097 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172926 [TUS-14-M20] | Trace: SGN-T200222 | EST: SGN-E399096 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394079 | Length: 679 bp (856 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E394079 [] (trimmed)
AATAATAAACCATTACTATTTGAGAATTGCCTGATAACAAATAAACTGCAAAAAGAATTCTCATCCTAAGGACAAGAATAAAAGCCTTAAAACAT
CTAACAAGACCAACACTGACCCAAACTAACTTTTTTTAAACTAAGAAACTTAATTAACACTAACCTTAGCCCTTAATCTAATCTCCTAAAATATA
ATCATCTAACTTTTTTTTTTCTATTTCCATATTACATAACATCCCTATACAAAAAGAACATTGAACAAAGAAATTGAAAAAAAAACTAGCCAAAT
AACACTAAGAACTGAAATGACAGACTCTATGACTAGGAAAAACTGTTTCTCTGCTTCTTTTCATTCACTTGTGCTCCTCCTCAACCGACACATTG
CTCGGGTTGAACTCCAGTTGGGTGGCTATTGCTGGTGATGAGGTCCTGGCTATGATGTCGTTGTCTGGGACGATGGTGGTTCTCATTTCAAGAAC
CTTCTTGTGAGAGTTTGAGTGCAATGCTGGAACAAATGTAGGACTTGCAGCTGGCCTGTATTCAGGGAAGAGTCGTCCTGACTTGTAACGAACAC
CACAGGCGTTGCAGAGAGTTTTTGGTCCCATTGGACCACCCCTCCATTGAGGAGTCTTTGTTATCTCGCAATGCTGGCATTTCCAAACTGCTTGT
TTTGCCACTGAATT
CTAACAAGACCAACACTGACCCAAACTAACTTTTTTTAAACTAAGAAACTTAATTAACACTAACCTTAGCCCTTAATCTAATCTCCTAAAATATA
ATCATCTAACTTTTTTTTTTCTATTTCCATATTACATAACATCCCTATACAAAAAGAACATTGAACAAAGAAATTGAAAAAAAAACTAGCCAAAT
AACACTAAGAACTGAAATGACAGACTCTATGACTAGGAAAAACTGTTTCTCTGCTTCTTTTCATTCACTTGTGCTCCTCCTCAACCGACACATTG
CTCGGGTTGAACTCCAGTTGGGTGGCTATTGCTGGTGATGAGGTCCTGGCTATGATGTCGTTGTCTGGGACGATGGTGGTTCTCATTTCAAGAAC
CTTCTTGTGAGAGTTTGAGTGCAATGCTGGAACAAATGTAGGACTTGCAGCTGGCCTGTATTCAGGGAAGAGTCGTCCTGACTTGTAACGAACAC
CACAGGCGTTGCAGAGAGTTTTTGGTCCCATTGGACCACCCCTCCATTGAGGAGTCTTTGTTATCTCGCAATGCTGGCATTTCCAAACTGCTTGT
TTTGCCACTGAATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394079] | SGN-U563049 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195405 [Download][View] | Facility Assigned ID: FA0AAD2BG10FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0047 | Quality Trim Threshold: 14.5 |
Working
