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EST details — SGN-E394078

Search information 
Request: 394078Match: SGN-E394078
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172924Clone name: TUS-14-M18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172924 is on microarray TOM1 spot ID 1-1-7.1.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14295 [cLEC-7-H18] Trace: SGN-T25346 EST: SGN-E202064 Direction: 5' Facility: TIGR
Clone: SGN-C172924 [TUS-14-M18] Trace: SGN-T195404 EST: SGN-E399095 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E394078Length: 682 bp (850 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E394078 [] (trimmed) GTATAAATTCGATAGTTACATTTTCAAGATACTCCAGTACTCACTTTACGAGCATTGAATTAGGTTAGTTACAAGACAAACTGTGCCATTTGGAG
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCTAGACCTTCCCCTCCAGTACTTCGATTTGACGTAGGCCGTG
ACTCTGCAAATTTGGTGAATACTAGTGGTATATCTTGTGGGCTAATTCCACACCCAGTATCTCTAACCTGGACACGCAAATAAAACTGGCCATCA
CTTGGCATAGGGAACATTTCAGGAGGATGACAATCTCTCGCATACTCTGGTTTGGCAACTGAAGCCTCAATTGAAATATGTCCTTCTTTAGTGAA
CTTCACAGCATTTCCCG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394078] SGN-U580538 Tomato 200607 Build 2 122 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195404 [Download][View] Facility Assigned ID: FA0AAD2BG09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0036 Quality Trim Threshold: 14.5