EST details — SGN-E394028

Search information 
Request: 394028Match: SGN-E394028
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183361Clone name: TUS-41-P15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183361 is on microarray TOM1 spot ID 1-1-2.4.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183361 [TUS-41-P15] Trace: SGN-T200161 EST: SGN-E398882 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E394028Length: 585 bp (845 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E394028 [] (trimmed) CCTTGTAAAAGTGAACATTAAACACAGTGATATTCTTACAATGAATTTTTAGACTTGTACAATTTAATCTGTAAAAAAACTGCCTATAGCAGACA
GTAGTAATAAACTTTACAACATATCTTGCAAGTTGAGCTCTCTATAGCTTTTACCTGAGCTTGTCGCAATTTCCAACTTGACCACGGAGATGATA
AACAAGCTCGGAGTAGTAAGTTTGAGAGTTCGGAAGCAAATGTCATAAAGAGCTTCATTATCCAAAACCATACACTCATCTGCATTCTCAACAAG
CTGGTGAACAGAAAGAGTAGCATTATAGGGCTCAACAACTGTGTCTGAAACTTTGGGGGAAGGGAATACAGAGAAAGTAAGCATCATTCTATCTG
GGTACTCCTCCCTGATCTTAGATATAAGGAGTGTTCCCATTCCTGATCCAGTTCCACCTCCTAGAGAGTGAGCAACCTGGAAACCTTGTAAACAG
TCACAATTCTCAGCCTCCTTCCTCACAACATCAAGCCCCGAGTCAATAAGCTCCGCTCCCTCCGTATAGTGTCCCTTGGCCCAGTTGTTACCAGC
CCCTGACTGGCCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E394028] SGN-U564024 Tomato 200607 Build 2 11 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195354 [Download][View] Facility Assigned ID: FA0AAD29CH08FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0054 Quality Trim Threshold: 14.5