EST details — SGN-E393996
| Search information |
| Request: 393996 | Match: SGN-E393996 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172911 | Clone name: TUS-14-M5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172911 is on microarray TOM1 spot ID 1-1-4.1.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14271 [cLEC-7-G14] | Trace: SGN-T25424 | EST: SGN-E202142 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172911 [TUS-14-M5] | Trace: SGN-T195141 | EST: SGN-E393815 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172911 [TUS-14-M5] | Trace: SGN-T195142 | EST: SGN-E393816 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172911 [TUS-14-M5] | Trace: SGN-T195142 | EST: SGN-E398975 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172911 [TUS-14-M5] | Trace: SGN-T195321 | EST: SGN-E393995 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172911 [TUS-14-M5] | Trace: SGN-T195321 | EST: SGN-E398974 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393996 | Length: 603 bp (841 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393996 [] (trimmed)
ATCTTCTCTATCGACCATGTTGAGCCAACCTCACTGTGCTGTGCGCATCAAATTCCCTAAACAATATTCGGTCAGATTCCTTTCTTCGAAGCTTC
TTGAAGTTCAATCAACCTCCTCCCGCCGCACCTCAGTTTCTCTTGGGAGGAGTTCTACATTCTCTATCAAGATATCCAGGAATTTCTCGCAGTGT
CACTCCCGCACTTCCTTAACCAGCAAGAACCAAATTCCAACCCTCCGTGACTTCATACCCAAAGCTACTCAGACTGTTTCTTCTTCCGATGTTCA
GCAGGAGTCTGTGATGATATCTGACGTTATGCCTAGAGGACGCATCTATCATGAAACTTATGGATGTCAAATGAATGTCAATGATATGGAGATTG
TTTTATCCATCATGAAAAATGCTGGATACACTGAAAGTGTGGAAGTCCCAGAAAATGCTGAGATAATATTTATAAATACTTGTGCTATAAGGGAC
AATGCAGAACTTAAGGTTTGGCAGAGGCTCAATTATTTTTGGTTTCTTAAGAGGCAATGGAAGAGCAATGTTGCCTCTGGAAAGTCACAGTCTGC
ACATCCCCCCAAAGTAGTTGTGCTGGGGTGTAT
TTGAAGTTCAATCAACCTCCTCCCGCCGCACCTCAGTTTCTCTTGGGAGGAGTTCTACATTCTCTATCAAGATATCCAGGAATTTCTCGCAGTGT
CACTCCCGCACTTCCTTAACCAGCAAGAACCAAATTCCAACCCTCCGTGACTTCATACCCAAAGCTACTCAGACTGTTTCTTCTTCCGATGTTCA
GCAGGAGTCTGTGATGATATCTGACGTTATGCCTAGAGGACGCATCTATCATGAAACTTATGGATGTCAAATGAATGTCAATGATATGGAGATTG
TTTTATCCATCATGAAAAATGCTGGATACACTGAAAGTGTGGAAGTCCCAGAAAATGCTGAGATAATATTTATAAATACTTGTGCTATAAGGGAC
AATGCAGAACTTAAGGTTTGGCAGAGGCTCAATTATTTTTGGTTTCTTAAGAGGCAATGGAAGAGCAATGTTGCCTCTGGAAAGTCACAGTCTGC
ACATCCCCCCAAAGTAGTTGTGCTGGGGTGTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393996] | SGN-U563728 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195322 [Download][View] | Facility Assigned ID: FA0AAD2AG03RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0014 | Quality Trim Threshold: 14.5 |
Working
