EST details — SGN-E393966
| Search information |
| Request: 393966 | Match: SGN-E393966 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172623 | Clone name: TUS-14-A5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172623 is on microarray TOM1 spot ID 1-1-4.1.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10705 [cLEC-6-A18] | Trace: SGN-T23948 | EST: SGN-E202287 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172623 [TUS-14-A5] | Trace: SGN-T195089 | EST: SGN-E393763 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172623 [TUS-14-A5] | Trace: SGN-T195089 | EST: SGN-E398886 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172623 [TUS-14-A5] | Trace: SGN-T195291 | EST: SGN-E393965 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172623 [TUS-14-A5] | Trace: SGN-T195291 | EST: SGN-E398885 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393966 | Length: 666 bp (833 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393966 [] (trimmed)
CTCGAGTTTTCTTGTTTGTTTTGTACAAGTTAATGAGGTTCACATGGTTCTTTGAAATCTTAGTGGTTCTCTTCTGCATCGGTGGTGTGGAGGGG
CTACAAACTTGCTTAGTTGCCTTGCTAGCTAGGTGGTTTAAGCCTACGGGAGAGTCATACATTAAAGTACCCATTTTTGGTGCAGTTTCTTATCT
TACTTTGGCTGTTTCGCCATTCTGCATAACTTTTGCAGTGGTTTGGGCAATGTACAGAAATTCTTCTTTTGGCTGGATAGGTCAAGACATACTTG
GCATTGCACTTATAATTACAGTTCTGCAAATTGTGCGGATACCTAATCTCAAGGTTGGTTCAGTTCTTTTGGGTTGCGCCTTCATCTACGACATA
TTTTGGGTATTTGCTTCTCAGAGTCTCTTCCATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGATAAAAGTGGAGAAGATGGTATTCCAATGCT
GCTGAAGATTCCACGACTATTTGATCCATGGGGTGGTTACAGCATTATCGGCTTTGGTGACATCCTATTGCCTGGACTGCTAGTAGCATTTTCAC
TTAGGTATGATTGGCTTGCAAAAAAAAATCTTCGAGCTGGTTACTTCTTGTGGGCAATGATTGCATATGGATTAAGTCTTCTTAAAACATATGTA
A
CTACAAACTTGCTTAGTTGCCTTGCTAGCTAGGTGGTTTAAGCCTACGGGAGAGTCATACATTAAAGTACCCATTTTTGGTGCAGTTTCTTATCT
TACTTTGGCTGTTTCGCCATTCTGCATAACTTTTGCAGTGGTTTGGGCAATGTACAGAAATTCTTCTTTTGGCTGGATAGGTCAAGACATACTTG
GCATTGCACTTATAATTACAGTTCTGCAAATTGTGCGGATACCTAATCTCAAGGTTGGTTCAGTTCTTTTGGGTTGCGCCTTCATCTACGACATA
TTTTGGGTATTTGCTTCTCAGAGTCTCTTCCATGAAAGTGTGATGATTGTGGTAGCTCGTGGTGATAAAAGTGGAGAAGATGGTATTCCAATGCT
GCTGAAGATTCCACGACTATTTGATCCATGGGGTGGTTACAGCATTATCGGCTTTGGTGACATCCTATTGCCTGGACTGCTAGTAGCATTTTCAC
TTAGGTATGATTGGCTTGCAAAAAAAAATCTTCGAGCTGGTTACTTCTTGTGGGCAATGATTGCATATGGATTAAGTCTTCTTAAAACATATGTA
A
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393966] | SGN-U567575 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195292 [Download][View] | Facility Assigned ID: FA0AAD2AA03RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0054 | Quality Trim Threshold: 14.5 |
Working
