EST details — SGN-E393957

Search information 
Request: 393957Match: SGN-E393957
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182249Clone name: TUS-39-B7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182249 is on microarray TOM1 spot ID 1-1-2.2.8.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C574 [cLEB-3-P20] Trace: SGN-T22971 EST: SGN-E203225 Direction: 5' Facility: TIGR
Clone: SGN-C574 [cLEB-3-P20] Trace: SGN-T22972 EST: SGN-E203226 Direction: 3' Facility: TIGR
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Sequence 
Sequence Id: SGN-E393957Length: 565 bp (880 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393957 [] (trimmed) AAATAGGAACATGAAATGGAAAGAGGTGGTTCTGATGAAGAAAATGGAGAAACTTCTAGAAAGAAATTAAGGCTATCAAAAGACCAATCTGCCAT
TCTTGAAGAAAGTTTCAAAGAACACAACGCACTCAATCCAAAACAAAAGCTGGCTTTGGCTAAAAGACTGGGATTGAGGCCTAGGCAAGTTGAGG
TGTGGTTTCAGAATAGGAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTTGACTGTGAGTTTTTGAAAAGATGTTGTGAAAATTTGACGGAGGAA
AACAGGAGATTACAAAAAGAAGTTCAAGAGTTGAGGGCATTAAAGCTTTCACCTCAATTCTACATGCAAATGACCCCTCCCACCACCCTCACCAT
GTGCCCTTCATGTGAGCGTGTCGCGGGCCCACCGCCATCCTCATCTGGGCCCACATCCACACCAATGGGCCAGGCCCAACCCAGGCCCATGCCGT
TTAACCAATGGGCCAATGCACTACATCCGAGATCTTGATTTTGCAAGAAAGGCGATTTGGTCAAATGAAAGTGACTAGACAAACTTGTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393957] SGN-U573652 Tomato 200607 Build 2 9 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195283 [Download][View] Facility Assigned ID: FA0AAD27CA04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0107 Quality Trim Threshold: 14.5