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EST details — SGN-E393939

Search information 
Request: 393939Match: SGN-E393939
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C172976Clone name: TUS-14-O22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172976 is on microarray TOM1 spot ID 1-1-3.3.20.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172976 [TUS-14-O22] Trace: SGN-T195413 EST: SGN-E394087 Direction: 5' Facility: INRA
Clone: SGN-C172976 [TUS-14-O22] Trace: SGN-T195709 EST: SGN-E394383 Direction: 5' Facility: INRA
Clone: SGN-C172976 [TUS-14-O22] Trace: SGN-T195709 EST: SGN-E399112 Direction: 5' Facility: INRA
Clone: SGN-C172976 [TUS-14-O22] Trace: SGN-T195801 EST: SGN-E394475 Direction: 3' Facility: INRA
Clone: SGN-C172976 [TUS-14-O22] Trace: SGN-T195801 EST: SGN-E399111 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393939Length: 468 bp (848 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393939 [] (trimmed) GAAACGGAGAAATAAAACTTCATCCGAATACATCTGCTTTTGAGTATGTGAGAATCTAGACAAGTTTAATCCTCATAGAGAAGAAAAAAAAATAC
CATCATTTATTTTTCTTATATTAAATATGAGTGAACCTTGAAGGAAGCCTCAGGCCCCTGAACCAGCCAATCGTCGTTTGGTGGCGTTGGAGACG
GAGACGTGACCGAGCTTGTCTGCTTCGGAATGTGGTGATCGTTCTTTGAGAGGCATATAGTGACGCATCCATACACCAGTATACACCTGTGCGGG
TCTCATAATCTTGGTATCAGGATCATCAAGGGACTCATTCCAATGAGACAAGTAACCGGCCATCCGAGGAATTGCAAACAAGACAGGAAAGAATT
CTGTTGGAAATCCCATTGCCCTGTAAATTAAACCAGAGTAGAAATCAACGTTTGGATGGGGGGGGGGGGGGGGAAAGTACTCATCCGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393939] SGN-U578446 Tomato 200607 Build 2 61 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195265 [Download][View] Facility Assigned ID: FA0AAD2BH11FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.979 Expected Error Rate: 0.0065 Quality Trim Threshold: 14.5