EST details — SGN-E393890
| Search information |
| Request: 393890 | Match: SGN-E393890 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172688 | Clone name: TUS-14-C22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172688 is on microarray TOM1 spot ID 1-1-3.3.20.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10805 [cLEC-6-F14] | Trace: SGN-T24213 | EST: SGN-E202552 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T1260 | EST: SGN-E378336 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T195368 | EST: SGN-E394042 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T195659 | EST: SGN-E394333 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T195659 | EST: SGN-E399033 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T199597 | EST: SGN-E398271 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172688 [TUS-14-C22] | Trace: SGN-T199597 | EST: SGN-E399034 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393890 | Length: 610 bp (821 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393890 [] (trimmed)
CTTTATTATAGTCTGTTGAATCGAAATTACAGATAACATAGAGAAATGAAAGTGTAATACAGAGAACTCTGAACTCTAATTTGGCTTATCAAACC
ATTTATTTATGTATTTATACCTTCATATAGTTCATGTATAGCATGAAATTTTTCCAGATTACGTTCATAATCTGCTAAGTTTCTATCCATGTCCT
CCTATAGATCATTTTTGTACATAAAACGCGATTTTTTTTCCCTTTAGCAACAGCTGGTTTAGCTTAAACCTGTACTTTTATAAACGCGACAGAGT
CATACCTTGTCTTGTCCTTCTCATTATTCATTAGTGAGAAGATCTCAGTTGGTAAGTAGCACTCCCCTATGGCCCTGGAAGAATTTAAACCACTA
CGAAAGAACGCAGCTTTACAGGAACATTTATCCAAACATGCGCGTTTACAAGTACTCACATGGGGGTTGCTGATATCTGCAGTAAACGCGAAATA
GTCCACATCTTCAACTTCCAAAAGTCTGTGTTTCTTTAAGTTGTTGCACCTCAGCTTTTTGGCCTCAGAGCAACCGAAATTAGGCAGCCTAACAT
TTATCCGTCTGAAATAAGTAGTTGAAATAAAGCTTATGGG
ATTTATTTATGTATTTATACCTTCATATAGTTCATGTATAGCATGAAATTTTTCCAGATTACGTTCATAATCTGCTAAGTTTCTATCCATGTCCT
CCTATAGATCATTTTTGTACATAAAACGCGATTTTTTTTCCCTTTAGCAACAGCTGGTTTAGCTTAAACCTGTACTTTTATAAACGCGACAGAGT
CATACCTTGTCTTGTCCTTCTCATTATTCATTAGTGAGAAGATCTCAGTTGGTAAGTAGCACTCCCCTATGGCCCTGGAAGAATTTAAACCACTA
CGAAAGAACGCAGCTTTACAGGAACATTTATCCAAACATGCGCGTTTACAAGTACTCACATGGGGGTTGCTGATATCTGCAGTAAACGCGAAATA
GTCCACATCTTCAACTTCCAAAAGTCTGTGTTTCTTTAAGTTGTTGCACCTCAGCTTTTTGGCCTCAGAGCAACCGAAATTAGGCAGCCTAACAT
TTATCCGTCTGAAATAAGTAGTTGAAATAAAGCTTATGGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393890] | SGN-U570753 | Tomato 200607 | Build 2 | 80 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195216 [Download][View] | Facility Assigned ID: FA0AAD2BB11FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0075 | Quality Trim Threshold: 14.5 |
Working
