EST details — SGN-E393868

Search information 
Request: 393868Match: SGN-E393868
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183313Clone name: TUS-41-N15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183313 is on microarray TOM1 spot ID 1-1-2.2.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C28601 [cLEF-48-E22] Trace: SGN-T62204 EST: SGN-E245715 Direction: 5' Facility: TIGR
Clone: SGN-C183313 [TUS-41-N15] Trace: SGN-T195351 EST: SGN-E394025 Direction: 5' Facility: INRA
Clone: SGN-C183313 [TUS-41-N15] Trace: SGN-T195638 EST: SGN-E394312 Direction: 5' Facility: INRA
Clone: SGN-C183313 [TUS-41-N15] Trace: SGN-T195638 EST: SGN-E398879 Direction: 5' Facility: INRA
Clone: SGN-C183313 [TUS-41-N15] Trace: SGN-T195824 EST: SGN-E394498 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393868Length: 457 bp (842 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393868 [] (trimmed) AAGGATGAAAAGTTTTATTAACTTAAGCTAATTAAACCTCCCAAACCGGAAAGTTGATTAATATTGTTTGGAACAAAACCTATACAATTAATTAA
TTAAACCCCCCGGAAAATTATTTCACCCCTCCTTGCCGACGGGGCGGAACATCCATGGGGGTATCAAAGAAGAATTATTATTATTGTTATTTGAA
CCCCGAAAAGGATGAACCCGACCCCATCCCTCCCCGGTCATTCCCCCAAAAGCCCCCCCAATTGTAAGGGTAAGAAATTGGGGGGGAAAATGGGA
AGGAAACACATGAACTGGTGCTGAATTTTGGCCCGAAGAATTGGGGTGGGCCCTCCCATTTTCTTTTAACTTCTTAGGAACCAAGTTGTTTTGTT
CCTGGAACCCTTTCCCCTTTTTCTGCCCCCCAAAAAAAGGACCCGGGCCCCAATTGATTCCTCCCGCCTCCAATTCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393868] SGN-U583378 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195194 [Download][View] Facility Assigned ID: FA0AAD29CG08FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.877 Expected Error Rate: 0.0228 Quality Trim Threshold: 14.5