EST details — SGN-E393855
| Search information |
| Request: 393855 | Match: SGN-E393855 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183177 | Clone name: TUS-41-H23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183177 is on microarray TOM1 spot ID 1-1-2.4.3.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183177 [TUS-41-H23] | Trace: SGN-T195341 | EST: SGN-E394015 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183177 [TUS-41-H23] | Trace: SGN-T195341 | EST: SGN-E398863 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183177 [TUS-41-H23] | Trace: SGN-T195342 | EST: SGN-E394016 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183177 [TUS-41-H23] | Trace: SGN-T195342 | EST: SGN-E398864 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183177 [TUS-41-H23] | Trace: SGN-T195343 | EST: SGN-E394017 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393855 | Length: 703 bp (807 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393855 [] (trimmed)
GGGCCCCCCCCTTTTTTTCCGCAATCAATTTCTCCAATGAAACAATTGTAAACTTGTTTAGGTAACAACATAAATAAACAAATTTTTCAGATCAA
CCCCCACACACCAATTTGATCTGAAATAAAAAATTGATTTTCAGGTCAAATGATAATGGCACTTGGTGGTAAAAAAAAAAAAAGATGGTAACTTT
CAAGAAAAAAGAAAATACAAGCACACAAAAAATAAATCTAAACACTTTCTTGACACTTGGTTTAACTAATTATCTGAAGCATCCAGCATGTATGG
TTCACTTAACCATCCTACCAGAGCAGAAGAAATGCATCCCACACAGCAGCGGTTGCGAAAAGAGCTGGTATCATTATCTGTGCTTTAAATGAGTT
GAGCAAATTTGTTGAACTGCTGCGTACTGGAGCAGCTTTTGGAGGTGGAGGTGCCTTTTCAACATGAATAGCCACTTTCATGCCTCCATAACAGT
ATCCTTTTCCACTAGCGAAATAGTAGGTTTTAGTCACATTAAGCGGAACAACGTCCCTTCCTGCTCCAGTAGTCCAATTGTGGAGAGGATGATCA
GTATTGCAGCTCTCGTAGTCTGTCTTGTTTAGCTCAAGCACATTCATCTGGTTCCTGTCATACACAAAAACTGGGATGGGAGAAGGAAGAGTTAC
TAAACAACAACAAATAACTGAAGATATCTCAATATTTT
CCCCCACACACCAATTTGATCTGAAATAAAAAATTGATTTTCAGGTCAAATGATAATGGCACTTGGTGGTAAAAAAAAAAAAAGATGGTAACTTT
CAAGAAAAAAGAAAATACAAGCACACAAAAAATAAATCTAAACACTTTCTTGACACTTGGTTTAACTAATTATCTGAAGCATCCAGCATGTATGG
TTCACTTAACCATCCTACCAGAGCAGAAGAAATGCATCCCACACAGCAGCGGTTGCGAAAAGAGCTGGTATCATTATCTGTGCTTTAAATGAGTT
GAGCAAATTTGTTGAACTGCTGCGTACTGGAGCAGCTTTTGGAGGTGGAGGTGCCTTTTCAACATGAATAGCCACTTTCATGCCTCCATAACAGT
ATCCTTTTCCACTAGCGAAATAGTAGGTTTTAGTCACATTAAGCGGAACAACGTCCCTTCCTGCTCCAGTAGTCCAATTGTGGAGAGGATGATCA
GTATTGCAGCTCTCGTAGTCTGTCTTGTTTAGCTCAAGCACATTCATCTGGTTCCTGTCATACACAAAAACTGGGATGGGAGAAGGAAGAGTTAC
TAAACAACAACAAATAACTGAAGATATCTCAATATTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393855] | SGN-U586153 | Tomato 200607 | Build 2 | 29 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195181 [Download][View] | Facility Assigned ID: FA0AAD29CD12FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
