EST details — SGN-E393840
| Search information |
| Request: 393840 | Match: SGN-E393840 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183021 | Clone name: TUS-41-B11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183021 is on microarray TOM1 spot ID 1-1-6.2.3.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C67213 [cLEN-17-N18] | Trace: SGN-T90906 | EST: SGN-E276485 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183021 [TUS-41-B11] | Trace: SGN-T195165 | EST: SGN-E393839 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183021 [TUS-41-B11] | Trace: SGN-T195809 | EST: SGN-E394483 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183021 [TUS-41-B11] | Trace: SGN-T195809 | EST: SGN-E398840 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183021 [TUS-41-B11] | Trace: SGN-T200140 | EST: SGN-E398841 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393840 | Length: 547 bp (863 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393840 [] (trimmed)
AGAAGATTGAGGATTCATGGATACCAGAAATGTGTAAGATGAGGTTAATGCTGAGATTGGTGCTTCTTTAATCTGATGAGAAAATGTTCATTGTT
TGGACTGCATTTGACTTGCAATTCTGTGCATAAAGGAATGTTAGGTTTTATTGCATTGTTGTTTATAAATAAACTTGTATTACAAAGGGAGCAAT
TGAGGAGAATTCTGAAAGACTTCTCTTCTATTTATCAAGAACTGATGTGACAAGTCACAAGTACTTGCAATTATAAATGTCACACAGGAGTGAGG
ACCATGAATTGGCTTTCTGGTGTTATATCCCACATATTTCCGTGTCTATGATTTCTGGATTCAATTTTGAAGTTTCTTCGCAGAATTATTAGGAT
CTGTTGCTAGTAATCCAGGGCAAAATTCAACATCCGGCGCCAAGGGGTGAGTTCTCACTTCCAAGTGCTGCCTCCAAAATTGGTTTGTGGATAGC
CATAAACCCTGTATGGTGTAAAATATGTTGGCTTAATGTCTGTATCCTTTGAGATTTACCATTTGTTCTTGA
TGGACTGCATTTGACTTGCAATTCTGTGCATAAAGGAATGTTAGGTTTTATTGCATTGTTGTTTATAAATAAACTTGTATTACAAAGGGAGCAAT
TGAGGAGAATTCTGAAAGACTTCTCTTCTATTTATCAAGAACTGATGTGACAAGTCACAAGTACTTGCAATTATAAATGTCACACAGGAGTGAGG
ACCATGAATTGGCTTTCTGGTGTTATATCCCACATATTTCCGTGTCTATGATTTCTGGATTCAATTTTGAAGTTTCTTCGCAGAATTATTAGGAT
CTGTTGCTAGTAATCCAGGGCAAAATTCAACATCCGGCGCCAAGGGGTGAGTTCTCACTTCCAAGTGCTGCCTCCAAAATTGGTTTGTGGATAGC
CATAAACCCTGTATGGTGTAAAATATGTTGGCTTAATGTCTGTATCCTTTGAGATTTACCATTTGTTCTTGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393840] | SGN-U568246 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195166 [Download][View] | Facility Assigned ID: FA0AAD29CA06RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.955 | Expected Error Rate: 0.0038 | Quality Trim Threshold: 14.5 |
Working
