EST details — SGN-E393825
| Search information |
| Request: 393825 | Match: SGN-E393825 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172957 | Clone name: TUS-14-O3 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172957 is on microarray TOM1 spot ID 1-1-6.3.20.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14362 [cLEC-7-K6] | Trace: SGN-T25269 | EST: SGN-E201987 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172957 [TUS-14-O3] | Trace: SGN-T195327 | EST: SGN-E394001 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172957 [TUS-14-O3] | Trace: SGN-T195327 | EST: SGN-E398988 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172957 [TUS-14-O3] | Trace: SGN-T195328 | EST: SGN-E394002 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172957 [TUS-14-O3] | Trace: SGN-T195606 | EST: SGN-E394280 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172957 [TUS-14-O3] | Trace: SGN-T195606 | EST: SGN-E398989 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393825 | Length: 683 bp (814 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393825 [] (trimmed)
AAGGTGACAAAAGGAAAATAGTAATTTTCATAGTAAAGAGAGAGAAAAACAAAACAAAGACACATGTAAGAATTTAATCATTACAACTTAGAACA
TTGATAGACATTAATTATTGTAATACATAAATCTAAAAACCAGAAGGATCGATTCACGTGAACTCATATATCCCCTTCTTAGTAAATCTAGTTGC
CCGCGAACGCGGCAGCCCCTGTAGCCACTGCACCTACTAAAGTAGCTGCAATTTGAGCTATATTAACTTTGTTATTGTAATCCTTTGATGGTGAT
GAGTCCATAACTATTAATTTATCACTTAGCACACTTGAATACATCAAAGTCCCAAAATTTGAACCACTCCTATCCACTACACAAGTGTTACATGA
TCTTGGACTTTGAGAATCTAGACTAAGGTTTACTTCACCAACATATTTATCGCGCGACAAACTCCTCTTACAAATCAATTCGATTTTAACATAAA
TTTTACCTTGTGCTTGTATGATATTGTATTCTGGCACGATGAACGTAAACATCTTGTTCCACTCAGGATTTATGCTTTTCACAAGATCCGGTTCT
GTACACTCACTCTTTCCTGCTATTGAAACCTTTGCATAAACTTTCATTTCTCCAAATTTTCGAACATTTATGAGATTACTAGCAGAATGAACCGT
AAAACATAAACATCTTGC
TTGATAGACATTAATTATTGTAATACATAAATCTAAAAACCAGAAGGATCGATTCACGTGAACTCATATATCCCCTTCTTAGTAAATCTAGTTGC
CCGCGAACGCGGCAGCCCCTGTAGCCACTGCACCTACTAAAGTAGCTGCAATTTGAGCTATATTAACTTTGTTATTGTAATCCTTTGATGGTGAT
GAGTCCATAACTATTAATTTATCACTTAGCACACTTGAATACATCAAAGTCCCAAAATTTGAACCACTCCTATCCACTACACAAGTGTTACATGA
TCTTGGACTTTGAGAATCTAGACTAAGGTTTACTTCACCAACATATTTATCGCGCGACAAACTCCTCTTACAAATCAATTCGATTTTAACATAAA
TTTTACCTTGTGCTTGTATGATATTGTATTCTGGCACGATGAACGTAAACATCTTGTTCCACTCAGGATTTATGCTTTTCACAAGATCCGGTTCT
GTACACTCACTCTTTCCTGCTATTGAAACCTTTGCATAAACTTTCATTTCTCCAAATTTTCGAACATTTATGAGATTACTAGCAGAATGAACCGT
AAAACATAAACATCTTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393825] | SGN-U585669 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195151 [Download][View] | Facility Assigned ID: FA0AAD2AH02FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.947 | Expected Error Rate: 0.0019 | Quality Trim Threshold: 12.5 |
Working
