EST details — SGN-E393748
| Search information |
| Request: 393748 | Match: SGN-E393748 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183447 | Clone name: TUS-42-D5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183447 is on microarray TOM1 spot ID 1-1-4.4.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32441 [cLEG-1-I7] | Trace: SGN-T64435 | EST: SGN-E248372 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183447 [TUS-42-D5] | Trace: SGN-T195073 | EST: SGN-E393747 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183447 [TUS-42-D5] | Trace: SGN-T195073 | EST: SGN-E399348 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183447 [TUS-42-D5] | Trace: SGN-T195074 | EST: SGN-E399349 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183447 [TUS-42-D5] | Trace: SGN-T195075 | EST: SGN-E393749 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393748 | Length: 644 bp (873 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393748 [] (trimmed)
AAAAAAAAAAAAATGTACATTATTTATTTCCCCATAATAATACATATATGTCCATGAATGCTAAAGTCCAAATGGAAAAAAACAAAAAAATAAAA
TAAAATAATAGTACTCAAAAAAAATAATATATTACCTACCAATCAAAATGACATCTAGTTTCTTCAAAATTACCAAATCTACCATTAAACTCCAA
AGGTACCTTAAAATCACATTCAATTTTAGGCTTAATTTTATGAGTTTTAATCCAACCAATCTTTACCCTAATACGCATATTAAGCTTCACTTCAA
TCTCATAAACCCCTAAATTCTTCTCATTACTATAATTTGATTTCTCTCTATCTCCCAATAAAACCAAACCTTGTCCTTTAAACACCGGATGCAAA
ATGCTAGTATTTTTGTGACCTTGATAAAACGGTTCCAGATTCTGACTAGCAAATCTCTGACCACCATATATAGCTCTTGCTTCTATCGAATCATA
GTAAATCCCAACGCGCTTGTTAGGGTTCCTTATAGTCATGTTGAGGGCTAGATCATAGTAAAGTGTGTTGTTTGTAGTGGAATAATCGAATTGTG
TCAACGTAGCATCAGTCACGTAAAATTTGACCTTGTTAGGACGTAGGACTAGCCAAAGGACTAACACAACGACT
TAAAATAATAGTACTCAAAAAAAATAATATATTACCTACCAATCAAAATGACATCTAGTTTCTTCAAAATTACCAAATCTACCATTAAACTCCAA
AGGTACCTTAAAATCACATTCAATTTTAGGCTTAATTTTATGAGTTTTAATCCAACCAATCTTTACCCTAATACGCATATTAAGCTTCACTTCAA
TCTCATAAACCCCTAAATTCTTCTCATTACTATAATTTGATTTCTCTCTATCTCCCAATAAAACCAAACCTTGTCCTTTAAACACCGGATGCAAA
ATGCTAGTATTTTTGTGACCTTGATAAAACGGTTCCAGATTCTGACTAGCAAATCTCTGACCACCATATATAGCTCTTGCTTCTATCGAATCATA
GTAAATCCCAACGCGCTTGTTAGGGTTCCTTATAGTCATGTTGAGGGCTAGATCATAGTAAAGTGTGTTGTTTGTAGTGGAATAATCGAATTGTG
TCAACGTAGCATCAGTCACGTAAAATTTGACCTTGTTAGGACGTAGGACTAGCCAAAGGACTAACACAACGACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393748] | SGN-U574800 | Tomato 200607 | Build 2 | 94 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195074 [Download][View] | Facility Assigned ID: FA0AAD30CB03RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.923 | Expected Error Rate: 0.0077 | Quality Trim Threshold: 14.5 |
Working
