EST details — SGN-E393731
| Search information |
| Request: 393731 | Match: SGN-E393731 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183668 | Clone name: TUS-42-M10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183668 is on microarray TOM1 spot ID 1-1-7.1.1.5 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183668 [TUS-42-M10] | Trace: SGN-T196045 | EST: SGN-E394719 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183668 [TUS-42-M10] | Trace: SGN-T200321 | EST: SGN-E399306 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183668 [TUS-42-M10] | Trace: SGN-T200320 | EST: SGN-E399305 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393731 | Length: 613 bp (846 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393731 [] (trimmed)
AGGCCATTAGTGCATAAACATCTTAGCCCAATCACAATGTTCATTCATATGGCTTCTCCAATGAGGCCCAAACCATATCAAGTACAAAGCCCAAA
AGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATCAAAATAAAATAGCCAA
AGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATACTCACTTATCTAGGAAA
AACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCAGCCAACATAAGCTCCG
GGAGGACGCTTGTTTCTGCAGTTCCATCAAGGGCGTTGGGCAATCCCAACGCTCGTAGGGCGAGGTGAGCTGCCTTCTGTCCTGATATCATCATA
GCTCCAAAAGTTGGACCCATTCGTGGTGCTCCATCAATTTCAGCAACTTCCATTCCTGTGACAATCATACCAGGTACCACCTCTCTGGTAAGTCT
AAAAATCCGTCCTCAGCATCGTTCATGTCCCAAAGCTTTCATT
AGGCCTAAAAGATTATTCAAGGAACGACCAAAACTAAAATCTACTTTCTTCCATAAAAGTTTCGAAATAGAAATAAATCAAAATAAAATAGCCAA
AGTTAACACAATGACTTTCATCTTGAAGACTCTTATTCATCATCCCCTTACCAATTTATCATCACCACCACAACCATACTCACTTATCTAGGAAA
AACTAATATTTCTCATAATCCTTGCTTAGAAAACTATAATTACATTCAAGCATCAGCAATTTCAGCTTCATCAGCTGCAGCCAACATAAGCTCCG
GGAGGACGCTTGTTTCTGCAGTTCCATCAAGGGCGTTGGGCAATCCCAACGCTCGTAGGGCGAGGTGAGCTGCCTTCTGTCCTGATATCATCATA
GCTCCAAAAGTTGGACCCATTCGTGGTGCTCCATCAATTTCAGCAACTTCCATTCCTGTGACAATCATACCAGGTACCACCTCTCTGGTAAGTCT
AAAAATCCGTCCTCAGCATCGTTCATGTCCCAAAGCTTTCATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393731] | SGN-U580030 | Tomato 200607 | Build 2 | 241 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195057 [Download][View] | Facility Assigned ID: FA0AAD30BG05FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 14.5 |
Working
