EST details — SGN-E393700
| Search information |
| Request: 393700 | Match: SGN-E393700 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183486 | Clone name: TUS-42-E20 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183486 is on microarray TOM1 spot ID 1-1-5.1.1.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183486 [TUS-42-E20] | Trace: SGN-T195025 | EST: SGN-E393699 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183486 [TUS-42-E20] | Trace: SGN-T195026 | EST: SGN-E399251 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183486 [TUS-42-E20] | Trace: SGN-T195027 | EST: SGN-E393701 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183486 [TUS-42-E20] | Trace: SGN-T200291 | EST: SGN-E399250 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393700 | Length: 704 bp (873 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393700 [] (trimmed)
AGGAAACATAAGTATAGGATTAACTAACGTTAAGCTTCACATCACCAAAAAAATGTAAGGAAAATGAGAGGCAGCATTAAATTTACACAAAATAT
TTCAAAAGAAAATGTATCAATAACTTGTACTCCACATCTCAACCCCTTTGTAATATAATAAATATTCCCCATATAATAAAAAAAACAATCCAACA
GCAAAATAGCTCAAAAAATAACCCCAATAAAATATAAATAAATACCCCCAAAAAGCTCAAAATAATAGTACTAGTTGATATCAACCAAAAGAAAA
ATCTATGAAACAAGAAAAGGCGGCTCAGCAATCTGAAATCTTGTTCTTGGACCTGTAAACAAGTTTCTTCTTTTTAGAAGTTTGGTTGTCAATTG
TGATTACCACTTTGCCTGCTTCACTTGCCTTGTAGCTAGTGCTGATCACTGATTCATTTGCCCCAACTTTTCTTGATTTCTCTATGAGAATGGTG
TAGCCACCTTCAGCACTAGGCACAAATTCAGCTCCATATGATACATCCCACCCTGTCACTCTTGCTTCCCAAACCAATGTGCTTTTCTCAGTAAC
TGGGAATTCAATGGTGTGTTTAGAAGCTGGCTTAATGATTTCCTCAGTGGCTGGTTCAGCAGTGGTGAATTCCTCTTCACCCTCCTTGCTAAGTC
CACCATATTGTGCTGGTACTTGTTCAGGTGCTATGTATT
TTCAAAAGAAAATGTATCAATAACTTGTACTCCACATCTCAACCCCTTTGTAATATAATAAATATTCCCCATATAATAAAAAAAACAATCCAACA
GCAAAATAGCTCAAAAAATAACCCCAATAAAATATAAATAAATACCCCCAAAAAGCTCAAAATAATAGTACTAGTTGATATCAACCAAAAGAAAA
ATCTATGAAACAAGAAAAGGCGGCTCAGCAATCTGAAATCTTGTTCTTGGACCTGTAAACAAGTTTCTTCTTTTTAGAAGTTTGGTTGTCAATTG
TGATTACCACTTTGCCTGCTTCACTTGCCTTGTAGCTAGTGCTGATCACTGATTCATTTGCCCCAACTTTTCTTGATTTCTCTATGAGAATGGTG
TAGCCACCTTCAGCACTAGGCACAAATTCAGCTCCATATGATACATCCCACCCTGTCACTCTTGCTTCCCAAACCAATGTGCTTTTCTCAGTAAC
TGGGAATTCAATGGTGTGTTTAGAAGCTGGCTTAATGATTTCCTCAGTGGCTGGTTCAGCAGTGGTGAATTCCTCTTCACCCTCCTTGCTAAGTC
CACCATATTGTGCTGGTACTTGTTCAGGTGCTATGTATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393700] | SGN-U579616 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195026 [Download][View] | Facility Assigned ID: FA0AAD30BC10RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.943 | Expected Error Rate: 0.0048 | Quality Trim Threshold: 14.5 |
Working
