EST details — SGN-E393696

Search information 
Request: 393696Match: SGN-E393696
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183480Clone name: TUS-42-E14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183480 is on microarray TOM1 spot ID 1-1-3.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183480 [TUS-42-E14] Trace: SGN-T195023 EST: SGN-E393697 Direction: 5' Facility: INRA
Clone: SGN-C183480 [TUS-42-E14] Trace: SGN-T199654 EST: SGN-E398328 Direction: 5' Facility: INRA
Clone: SGN-C183480 [TUS-42-E14] Trace: SGN-T199654 EST: SGN-E399248 Direction: 5' Facility: INRA
Clone: SGN-C183480 [TUS-42-E14] Trace: SGN-T200289 EST: SGN-E399247 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E393696Length: 555 bp (853 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393696 [] (trimmed) GAAGAAATCATTGATTAGATTCGTTGTGTAGATTTTGGTTATCTGCAGTTTTTGTTTTTCATTTTAAATTTGTGAATCGAGAGTGTATACGAATT
TATTCAAGGAAAACACTTTTAGGAGCTTTTGTTGATCCTTCAATGGCCGCACCACCGGCGAGGGCTAGAGCAGACTATGATTATCTCATTAAGCT
TCTTTTGATCGGCGATAGTGGTGTTGGTAAGAGTTGTCTTCTTTTACGTTTCTCTGATGGTTCCTTCACCACAAGCTTCATCACAACTATCGGAA
TTGATTTTAAAATTCGAACCATTGAGCTTGATGGAAAAAGAATCAAGCTTCAGATATGGGATACAGCTGGTCAGGAACGTTTTCGGACCATCACT
ACTGCTTACTATCGTGGAGCCATGGGTATACTGTTGGTGTATGATGTAACTGATGAATCCTCCTTTAACAACATCAGGAACTGGATTCGTAACAT
TGAGCAGCATGCCTCAGACAATGTTAACAAAATACTTGTAGGGAACAAGGCCGACATGGATGAAAACAAGAGGGCTGTCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393696] SGN-U578498 Tomato 200607 Build 2 40 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T195022 [Download][View] Facility Assigned ID: FA0AAD30BC07FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: Multiple cloning site sequence detected -- chimeric clone suspected.
Passed all screens and filters
Sequence Entropy: 0.982 Expected Error Rate: 1.0000 Quality Trim Threshold: 14.5