EST details — SGN-E393550
| Search information |
| Request: 393550 | Match: SGN-E393550 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182412 | Clone name: TUS-39-I2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182412 is on microarray TOM1 spot ID 1-1-7.1.8.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C20319 [cLED-2-B4] | Trace: SGN-T48904 | EST: SGN-E228256 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182412 [TUS-39-I2] | Trace: SGN-T194876 | EST: SGN-E398818 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182412 [TUS-39-I2] | Trace: SGN-T194877 | EST: SGN-E393551 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182412 [TUS-39-I2] | Trace: SGN-T194878 | EST: SGN-E393552 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182412 [TUS-39-I2] | Trace: SGN-T200432 | EST: SGN-E399502 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393550 | Length: 634 bp (829 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E393550 [] (trimmed)
CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGATGGGAAGAGGAAAGA
TAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTT
CTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAACATTAAGGCAACTATTGAACGATA
CAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGA
TACAAATGATGCAGAATTCAAACAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAA
CGAGGCATCAGCAGAATCAGATCAAAAAAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGAAATTCTACTGGAACAGGAGAA
TGCATTCCTTAGATCAAAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCA
TAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTT
CTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAACATTAAGGCAACTATTGAACGATA
CAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGA
TACAAATGATGCAGAATTCAAACAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAA
CGAGGCATCAGCAGAATCAGATCAAAAAAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGAAATTCTACTGGAACAGGAGAA
TGCATTCCTTAGATCAAAGATAGCAGAAAATGAGAGGCTTCAGGAACTAAGCATGATGCCAGCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393550] | SGN-U585391 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194876 [Download][View] | Facility Assigned ID: FA0AAD27BE01FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.944 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
