EST details — SGN-E393233

Search information 
Request: 393233Match: SGN-E393233
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C181838Clone name: TUS-38-A4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181838 is on microarray TOM1 spot ID 1-1-5.1.10.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6026 [cLEC-34-B5] Trace: SGN-T30366 EST: SGN-E207922 Direction: 5' Facility: TIGR
Clone: SGN-C181838 [TUS-38-A4] Trace: SGN-T194776 EST: SGN-E393450 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E393233Length: 521 bp (865 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393233 [] (trimmed) GCAAAACAGATGGTTGTCACTTTTGGTATGTCTGAACTTGGCCCGTGGTCCCTCATGGATTCTTCAGCCCAAAGTGGTGATGTAATCATGAGAAT
GATGGCCAGGAACTCGATGTCAGAAAAGCTAGCTGAAGACATTGATGTTGCTGTGAAGAAGCTTTCAGACAGTGCATATGAGATTGCATTGAGCC
AAATCCGCAGCAACCGTGAAGCAATTGATAAGATTGTGGAAGTCCTCCTTGAAAAGGAGACGATGACTGGAGATGAATTCCGTGCTATTCTCTCA
GAATTTGTTGAAATTCCTGCTGAAAACCGCGTCCCTGCTGCTGTTCCTACCCCAGCAGCTGTATAATAGCTTGAACATATACTGCAACTTGTACA
ATTCACATACACTTATCCCCCTAATTTGATCTAGAGTATAAACAATATATAGACTATAAGAAAGTTAAAAAACACTTTTGTGCATTTGTGTATGA
AGCAAATTTTCACATTTGATATAGAACTAGTCTTTTCTTCACTGTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393233] SGN-U565008 Tomato 200607 Build 2 66 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194559 [Download][View] Facility Assigned ID: FA0AAD26BA02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0000 Quality Trim Threshold: 12.5