EST details — SGN-E393213

Search information 
Request: 393213Match: SGN-E393213
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182081Clone name: TUS-38-K7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182081 is on microarray TOM1 spot ID 1-1-2.3.10.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C5203 [cLEC-30-O13] Trace: SGN-T29041 EST: SGN-E207045 Direction: 5' Facility: TIGR
Clone: SGN-C182081 [TUS-38-K7] Trace: SGN-T194540 EST: SGN-E393214 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E393213Length: 633 bp (837 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E393213 [] (trimmed) CCCAAAAAGGATATCAAATAAAATAAATACAAAATAAACTACTACCCCCCTTCCAATAACCTACAAAATAAAACAAAAAAAAAACCTTTTAATTT
TTTTTATTTGGCTAACAATCCATCAAAAAAAAACCCCAAACCCATGAAAAAATTTCCCCCCAAAAAAAAAAAAAACAAAAAAAAAACTACTTACC
CCCCCCAAAATCTTCTACTTTCGGGAGGAAAACCTTGGGGAAACCCCTTAAAATCCGTACAAAAATTAAAAATCCGGAAATTCTTTTGAACCCCT
CTAATTCTTCTTCCGCCATTAAAAACAAGTTCTTGATTTTGCCTTTTTTGATCAAAAAATTGGGAGGGGCTAAAGCTTTGGGCCAGGTATTTTCT
AAAAAAGGGGGGGAAGGGGGCTGGGGCCCAATCATTTTTTACAAGGCCCCCCCTTGGGGCCCAATCATCACCATTCCAAAGGGTTGAGAAAACCC
CCGGGGGCGGATTCTTTGGAAAGGGGACCCCAACGGATTCCGCATTTTTGTATACCCTTATGGGGGGGTTGGCCACCAAAAAAATGATGGGTTGG
GGTTTCCAAAAGAGGGAGAAGGGGGGGAAATTCCCCCGGGCCCAAATCCCGGCCCCCCGGGGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393213] SGN-U592163 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194539 [Download][View] Facility Assigned ID: FA0AAD26AF04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.895 Expected Error Rate: 0.0267 Quality Trim Threshold: 12.5