EST details — SGN-E392616

Search information 
Request: 392616Match: SGN-E392616
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C180860Clone name: TUS-35-H10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C180860 is on microarray TOM1 spot ID 1-1-7.4.17.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14830 [cLEC-9-E1] Trace: SGN-T25016 EST: SGN-E200722 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E392616Length: 236 bp (875 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E392616 [] (trimmed) TGAAAATGCTGATGATTTCATGGTTCTCGACAACGAGGCTCTATACGATATCTGCTTCAGAACCCTAAAGCTTACCACCCCAAGCTTTGGAGATC
TAAATCATCTGATATCAGCTACAATGTCTGGTGTCACCTGTTGCTTGCGTTTCCCTGGACAGTTGAACTCTGATCTTAGGAAGTTAGCTGTGAAT
CTGATTCCATTCCCTAGGCTCCATTTCTTCATGGTTGGTTTTGCAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E392616] SGN-U564020 Tomato 200607 Build 2 44 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T193942 [Download][View] Facility Assigned ID: FA0AAD23DD05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0048 Quality Trim Threshold: 14.5